View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14055_low_10 (Length: 281)

Name: NF14055_low_10
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14055_low_10
NF14055_low_10
[»] chr2 (4 HSPs)
chr2 (1-264)||(22111134-22111397)
chr2 (113-242)||(35512593-35512721)
chr2 (138-264)||(27918923-27919048)
chr2 (142-230)||(29966894-29966981)
[»] chr1 (6 HSPs)
chr1 (139-240)||(34487755-34487855)
chr1 (139-264)||(11832987-11833112)
chr1 (160-227)||(17048667-17048734)
chr1 (41-87)||(25517219-25517265)
chr1 (143-201)||(26858729-26858786)
chr1 (154-198)||(40817672-40817716)
[»] chr8 (2 HSPs)
chr8 (154-232)||(10517149-10517227)
chr8 (153-232)||(12842678-12842757)
[»] chr7 (3 HSPs)
chr7 (153-231)||(4514592-4514670)
chr7 (159-231)||(4123391-4123463)
chr7 (182-231)||(12223071-12223120)
[»] chr6 (1 HSPs)
chr6 (153-205)||(14760499-14760551)
[»] chr4 (1 HSPs)
chr4 (153-231)||(21546293-21546371)
[»] chr3 (2 HSPs)
chr3 (41-85)||(10867108-10867152)
chr3 (185-230)||(13494885-13494930)
[»] chr5 (3 HSPs)
chr5 (154-231)||(19761165-19761243)
chr5 (176-232)||(11849099-11849155)
chr5 (143-231)||(25955030-25955117)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 22111134 - 22111397
Alignment:
Q  1 agataataaccgacttcatacatttagatatattcaaaagtttcatatgttagaatttcttaagttatagaagtcatttgaacttaattgtagtttacaa 100  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22111134 agataataattgacttcatacacttagatatattcaaaagtttcatatgttagaatttcttaagttatagaagtcatttgaacttaattgtagtttacaa 22111233  T
Q  101 ctcttcgagtacaaagtgtaaacatttacatacatcactgtaaaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgt 200  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  22111234 ctcttcgagtacagagtgtaaacatttacatacatcattgtaaaactctgatttgtagaagtcctcttgtgtgaggcaagcaagtctctgacttgtgtct 22111333  T
Q  201 tagagcaattgtattcttgtgcgattatagtataaattccttaaaactataaggggactgaact 264  Q
    ||||||||||||||||||||| ||||||||| ||||| |||| ||| | |||||||||||||||    
T  22111334 tagagcaattgtattcttgtgtgattatagtgtaaatcccttgaaattgtaaggggactgaact 22111397  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 35512593 - 35512721
Alignment:
Q  113 aaagtgtaaacatttacatacatcactgtaaaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgt 212  Q
    ||||||||||||| |||||||     ||||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||| | ||| ||||||||||    
T  35512593 aaagtgtaaacatatacatactcttttgtaaaactatgatt-gtagaagtcctcttgtgttaggcaaggaagtctctgacttgggcgttggagcaattgt 35512691  T
Q  213 attcttgtgcgattatagtataaattcctt 242  Q
    | |||| || |||||||||| |||| ||||    
T  35512692 aatcttatgtgattatagtagaaatccctt 35512721  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 27918923 - 27919048
Alignment:
Q  138 ctgtaaaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagt-ataaa 236  Q
    |||| ||||||||||| ||| |||||||||| | |||| |||| ||||||||||||||||| || ||||||||||| ||||||| ||||||| | | |||    
T  27918923 ctgttaaactctgatt-gtataagtcctcttgtatgag-caaggaagtctctgacttgtgtattggagcaattgtaatcttgtgtgattataatgaaaaa 27919020  T
Q  237 ttccttaaaactataaggggactgaact 264  Q
    ||||||| ||||  ||||||||| ||||    
T  27919021 ttccttagaactgcaaggggactaaact 27919048  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 29966894 - 29966981
Alignment:
Q  142 aaaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatag 230  Q
    |||||||||||| |||  || |||||| ||||||||||| |||| ||||||||||||||| ||||||||||| |||||||  |||||||    
T  29966894 aaaactctgatt-gtatgagccctcttgtgtgaggcaaggaagtatctgacttgtgtgttggagcaattgtaatcttgtgtaattatag 29966981  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 34487855 - 34487755
Alignment:
Q  139 tgtaaaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagtataaatt 238  Q
    ||||||||||||||| ||| ||||| |||| ||||||  ||| |||||||| ||||||||||| ||| ||||||| ||||||| |||||||||  |||||    
T  34487855 tgtaaaactctgatt-gtataagtcatcttgtgtgagttaaggaagtctctaacttgtgtgttggagaaattgtaatcttgtgtgattatagtgaaaatt 34487757  T
Q  239 cc 240  Q
    ||    
T  34487756 cc 34487755  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 11833112 - 11832987
Alignment:
Q  139 tgtaaaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagt-ataaat 237  Q
    ||||||||| ||||| ||| ||||| |||| ||||||||||| ||||||   ||||||||||| ||||||||||| | |||||  |||||||| | ||||    
T  11833112 tgtaaaactttgatt-gtaaaagtcttcttatgtgaggcaaggaagtctaaaacttgtgtgtttgagcaattgtaattttgtgtaattatagtgaaaaat 11833014  T
Q  238 tccttaaaactataaggggactgaact 264  Q
     | || ||| | |||||||||||||||    
T  11833013 ccattgaaagtgtaaggggactgaact 11832987  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 17048667 - 17048734
Alignment:
Q  160 agtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgatta 227  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |  ||||||| ||||||| |||||    
T  17048667 agtcctcttctgtgaggcagggaagtctctgacttgtgttttgaaaaaattgtaatcttgtgtgatta 17048734  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 25517265 - 25517219
Alignment:
Q  41 tttcatatgttagaatttcttaagttatagaagtcatttgaacttaa 87  Q
    |||||||| ||||||||||||||||  |||||||||| |||||||||    
T  25517265 tttcatatcttagaatttcttaagtattagaagtcatatgaacttaa 25517219  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 26858729 - 26858786
Alignment:
Q  143 aaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgtt 201  Q
    ||||||||||| |||||||||||||| |||||| |||| |||| ||| |||||||||||    
T  26858729 aaactctgatt-gtagaagtcctcttgtgtgagtcaagaaagtttcttacttgtgtgtt 26858786  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 40817672 - 40817716
Alignment:
Q  154 tgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgt 198  Q
    ||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  40817672 tgtagaagtcctcttgtgtgaggtaagaaagtctcttacttgtgt 40817716  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 10517149 - 10517227
Alignment:
Q  154 tgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagta 232  Q
    |||| |||||||||| ||| || |||| ||||||||||||| ||||||||| |||||| | ||||||| ||||||||||    
T  10517149 tgtaaaagtcctcttgtgtaagacaaggaagtctctgacttatgtgttagatcaattgcaatcttgtgtgattatagta 10517227  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 12842757 - 12842678
Alignment:
Q  153 ttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagta 232  Q
    ||||| || ||||||| ||||||||||  |||||||  ||||||||||| || |||||||| ||||||| ||||||||||    
T  12842757 ttgtataattcctcttgtgtgaggcaaagaagtctcaaacttgtgtgtttgatcaattgtaatcttgtgtgattatagta 12842678  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 4514592 - 4514670
Alignment:
Q  153 ttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagt 231  Q
    ||||| |||||||||| ||||||||||| ||| || ||||||||||||| ||| ||||| | ||||||| |||||||||    
T  4514592 ttgtataagtcctcttgtgtgaggcaaggaagactttgacttgtgtgttggagaaattgcaatcttgtgtgattatagt 4514670  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 4123391 - 4123463
Alignment:
Q  159 aagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagt 231  Q
    ||||| |||| ||||||||||| |||||||  ||||||||||  ||| ||||||| ||||||| |||||||||    
T  4123391 aagtcttcttgtgtgaggcaaggaagtctcaaacttgtgtgtctgagaaattgtaatcttgtgtgattatagt 4123463  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 12223071 - 12223120
Alignment:
Q  182 aagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagt 231  Q
    ||||||||  |||||||||| ||||||||||| ||||||| |||||||||    
T  12223071 aagtctcttgcttgtgtgtttgagcaattgtaatcttgtgtgattatagt 12223120  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 14760551 - 14760499
Alignment:
Q  153 ttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagag 205  Q
    ||||| |||||||||| ||||||||| | ||||||||||||||||||||||||    
T  14760551 ttgtataagtcctcttgtgtgaggcacggaagtctctgacttgtgtgttagag 14760499  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 21546293 - 21546371
Alignment:
Q  153 ttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagt 231  Q
    ||||| ||||| |||| |||||||| || ||||| |||||||||||||| || ||||| || ||||||| |||||||||    
T  21546293 ttgtataagtcgtcttgtgtgaggcgaggaagtcactgacttgtgtgttggaacaattataatcttgtgtgattatagt 21546371  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 10867108 - 10867152
Alignment:
Q  41 tttcatatgttagaatttcttaagttatagaagtcatttgaactt 85  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||    
T  10867108 tttcatatcttagaatttcctaagttatagaagtcatgtgaactt 10867152  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 13494930 - 13494885
Alignment:
Q  185 tctctgacttgtgtgttagagcaattgtattcttgtgcgattatag 230  Q
    ||||||||||||||||| ||||||||||| ||||||  ||||||||    
T  13494930 tctctgacttgtgtgttcgagcaattgtaatcttgtttgattatag 13494885  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 19761243 - 19761165
Alignment:
Q  154 tgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaa-ttgtattcttgtgcgattatagt 231  Q
    ||||||||||||||| ||||||||||| |||||||| ||  || |||| |||||| ||||| |||| || |||||||||    
T  19761243 tgtagaagtcctcttgtgtgaggcaaggaagtctcttacccgtatgtttgagcaagttgtaatcttatgtgattatagt 19761165  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 11849099 - 11849155
Alignment:
Q  176 gcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagta 232  Q
    ||||| || |||| |||||||||||| || |||||||| ||||||| ||||||||||    
T  11849099 gcaaggaaatctcagacttgtgtgttggaccaattgtaatcttgtgtgattatagta 11849155  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 25955030 - 25955117
Alignment:
Q  143 aaactctgatttgtagaagtcctcttctgtgaggcaagcaagtctctgacttgtgtgttagagcaattgtattcttgtgcgattatagt 231  Q
    ||||||||||| |||||||||||||| ||| ||||||  || |||  |||||||||||   |  ||||||| |||||||||||||||||    
T  25955030 aaactctgatt-gtagaagtcctcttgtgtaaggcaatgaaatcttagacttgtgtgtctaaataattgtaatcttgtgcgattatagt 25955117  T

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