View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14055_low_2 (Length: 702)

Name: NF14055_low_2
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14055_low_2
NF14055_low_2
[»] chr5 (1 HSPs)
chr5 (1-684)||(13890515-13891204)


Alignment Details
Target: chr5 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 684
Target Start/End: Complemental strand, 13891204 - 13890515
Alignment:
Q  1 ccttcagtaaactccaattcacaatcctttccatccaaacccaaatcattaccaaaatcaaatcttgtcattctgttcacaacactcttccttgccacag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13891204 ccttcagtaaactccaattcacaatcctttccatccaaacccaaatcattaccaaaatcaaatcttgttattctgttcacaacactcttccttgccacag 13891105  T
Q  101 tcttaaccctcatctttcgtttatcgtttccttgcgctgtttccactgtttgattcaccttctcaaaaccttcatttctcacaccagcatcacccacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13891104 tcttaaccctcatctttcgtttatcgtttccttgcgctgtttccactgtttgattcaccttctcaaaaccttcatttctcacaccagcatcacccacatt 13891005  T
Q  201 cccccattctttctcccaatcaccatcatcatcagaaacataaacaaattcagcttcattctcacccattaagctctcatcaccgtttttcacttcgtaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13891004 cccccattctttctcccaatcaccatcatcatcagaaacataaacaaattcagcttcattttcacccattaagctctcatcaccgtttttcacttcgtaa 13890905  T
Q  301 aacttcaacggcactcttgccttacacttataatactgcctcttctcctccccttctacgacggttacaccaactttcaccggtgacttcaccgccacac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13890904 aacttcaacggcactcttgccttacacttataatactgcctcttctcctccccttctacgacggttgcaccaactttcaccggtgacttcaccgccacac 13890805  T
Q  401 cgtgaaaagttttcatacaagtttgacacatcaaagaacaatcttcgtattttttctcatactgatacaaattccaacaataaggacacgcagtccaaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13890804 cgtgaaaagttttcatacaagtttgacacatcaaagaacaatcttcgtattttttctcatactgatacaaattccaacaataaggacacgcagtccaaaa 13890705  T
Q  501 cgccgc------ggtggcggttacaccaccaccgcggtcataaacagcgcgttttccggggtcggagagaacgtgccaggcttcacgaacacgagctagg 594  Q
    ||||||      || |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13890704 cgccgcagtggtggcggcggttacaccaccaccacggtcataaacagtgcgttttccggggtcggagagaacgtgccaggcttcacgaacacgagctagg 13890605  T
Q  595 gcttcatcttgaaaagggaatttctcggagctagtgggatctaagaggattgcgaatttggcgtaatgctggcgagctaggtcacggttg 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13890604 gcttcatcttgaaaagggaatttctcggagctagtgggatctaagaggattgcgaatttggcgtaatgctggcgagctaggtcacggttg 13890515  T

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