View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14055_low_4 (Length: 482)
Name: NF14055_low_4
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14055_low_4 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 5885487 - 5885936
Alignment:
| Q |
8 |
cgaagaatattgtatacgcacacacaatgatactatgtaaggatccatgtttgctcatagtagatatttgattgatcctatagtagtatccatgattaaa |
107 |
Q |
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| T |
5885487 |
cgaagaaaattgtatacgcactcacaatgatactatgtaaggatccatgtttgctcatagtagatatttgattgatcctatagtagtatccatgagtaaa |
5885586 |
T |
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| Q |
108 |
aacaaaaagatttaaacaagaacctaattcatatataactaattatttgatcattttaatcgtttctatatctttgttcggcatctttcaccattttgaa |
207 |
Q |
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| T |
5885587 |
aacaaaaagatttaaacaagaacctgattcatatataactaattatt-gatcattttaatcgtttctatatctttattcggcatcgttcaccattttgaa |
5885685 |
T |
|
| Q |
208 |
gacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaacagttcctgctttaaaagaaaagcaattattgatt |
307 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5885686 |
gacagtatcagcccgctcagcaatgtttggtactttataattctaagcgacgtaaactccggcaacagttcctgctttaaaagaaaagcaattattgatt |
5885785 |
T |
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| Q |
308 |
ataccaattggaatttctctttaggtgttcacttgcattttgtacatgttgtttttactgaatttatcctttgttagtgcgctgccttctgttttgtggt |
407 |
Q |
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| T |
5885786 |
acaccaattggaatttctctttaggtgttctcttgcattttgtacatgttgtttttactgagtttatcctttgttagtgtgctgccttctgttttgtggt |
5885885 |
T |
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| Q |
408 |
gcctatttaatttgtactctttttcctccatagctggttaagtgcatcttatgcta |
463 |
Q |
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| T |
5885886 |
gcct-----atttgtactctttttcctccatagccggttaagtgcatcttatgcta |
5885936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 45373382 - 45373254
Alignment:
| Q |
189 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaacagttcctgctttaaa |
288 |
Q |
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||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||||||| | ||| |||||||| || ||||||||||| ||| ||| |
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| T |
45373382 |
catctttgaccattttgaagacggtatcagccctctcagcaatgttaggtagtttataattttgagcaacgtaaacaccggcaacagttccagctacaaa |
45373283 |
T |
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| Q |
289 |
agaaaagcaattattgattataccaattg |
317 |
Q |
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| T |
45373282 |
agagaagcaattcttgattataccaattg |
45373254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 45370079 - 45369973
Alignment:
| Q |
206 |
aagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaacagttcctgctttaaaagaaaagcaattattga |
305 |
Q |
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|||| ||||||||| ||| |||||||| |||||||||||| |||| |||||||||||| || | ||||||||||||| ||||||| |||||| |||| |
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| T |
45370079 |
aagaaagtatcagcgagcttagcaatgtcaggtactttatagttctgagcgacgtaaacaccggtaacagttcctgctataaaagagaagcaacccttga |
45369980 |
T |
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| Q |
306 |
ttatacc |
312 |
Q |
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||||||| |
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| T |
45369979 |
ttatacc |
45369973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 96341 - 96258
Alignment:
| Q |
189 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaa |
272 |
Q |
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| T |
96341 |
catctttgaccattttcaagacggtatcagccctctcagcaatgttaggcagtttataattttgagcaacgtaaactccggcaa |
96258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 9093378 - 9093295
Alignment:
| Q |
189 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaa |
272 |
Q |
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||||||| |||||||| ||||| |||||||||| |||||||||||||| | ||||||||| | ||||||||||||||| |||| |
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| T |
9093378 |
catctttgaccattttcaagacggtatcagccctctcagcaatgttagacagtttataattttgagcgacgtaaactccggcaa |
9093295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 463
Target Start/End: Complemental strand, 30421516 - 30421434
Alignment:
| Q |
376 |
ctttgttagtgcgctgccttctgttttgtggtgcctatttaatttgtactctttttcctccatagctggttaagtgcatcttatgcta |
463 |
Q |
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| T |
30421516 |
ctttggtagtgcgctgcggtctgttttgtagtgcctattt-----gtactctttttcctccttcgccggttaagtgcatcttgtgcta |
30421434 |
T |
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