View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14055_low_8 (Length: 345)
Name: NF14055_low_8
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14055_low_8 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 15498674 - 15498344
Alignment:
| Q |
1 |
agaatgcatagtcaaagatgtatcatgcaattcttaaactannnnnnncacacttcatctcttgt--ttgcccaagtgctcatatatc-tattctgattt |
97 |
Q |
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| T |
15498674 |
agaatgcatagtcaaagatgtatcatgcaattcttaaactatttttgtcagacttcatctcttgtgtttgcccaagcgcacatatatcctattctgattt |
15498575 |
T |
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| Q |
98 |
caaaacatgatattactaacattttagtaggcaattatctggtaattagtccaagttgtgcactcaacatcccttgatatgattaatattatctatcaaa |
197 |
Q |
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| T |
15498574 |
caaaacatgatattactaacattttagtaggcaattatctgttg-ttagtccaagttgtgcacttaacatcccttgatatgattaatattatctatcaaa |
15498476 |
T |
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| Q |
198 |
agaagcacaagaaatgcttaacagatattgacagaatcaaaattctatctcagtatctcaaaaccacaactaccatgctacactgagatatatagccaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15498475 |
agaagcacaagaaatgcttaacagatattgacagaatcaaaattctatctcagtatctcaaaaccacaactaccatgctacactgagatatatagccaaa |
15498376 |
T |
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| Q |
298 |
cttttgaaggttgaaatatcaagggaaattga |
329 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
15498375 |
cttttgaaggttgaaatatcaagggaaattga |
15498344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 32428416 - 32428599
Alignment:
| Q |
1 |
agaatgcatagtcaaa-gatgtatcatgcaattcttaaactannnnnnncacacttcatctcttgt---ttgcccaagtgctcatatatc-tattctgat |
95 |
Q |
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|||||||||||||||| |||||||||| ||| ||||| |||| |||| |||||||| ||| || |||||||||||| ||||| ||||||||| |
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| T |
32428416 |
agaatgcatagtcaaaagatgtatcattcaaatcttagactatttttctcacaattcatctcatgtgtttttcccaagtgctcacatatcctattctgat |
32428515 |
T |
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| Q |
96 |
ttcaaaacatgatattactaacattttagtaggcaattatctggtaattagtccaagttgtgcactcaacatcccttgatatgatta |
182 |
Q |
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||| ||| ||||| ||||||||||||||| |||||| | | ||| |||||||||||||| ||| |||| |||||||| |||||| |
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| T |
32428516 |
ttccaaatatgatgttactaacattttagcaggcaactct---gtagatagtccaagttgtgaacttaacaccccttgatgtgatta |
32428599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 11826 - 11867
Alignment:
| Q |
283 |
agatatatagccaaacttttgaaggttgaaatatcaagggaa |
324 |
Q |
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| T |
11826 |
agatatttagccaaacttctgaaggttgaaatatcaggggaa |
11867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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