View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14055_low_9 (Length: 320)
Name: NF14055_low_9
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14055_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 4343291 - 4343590
Alignment:
| Q |
1 |
tgacataattgaatgtaatcacatatgccagtgtccagacatcggacatgccttcagcgtcggtggtatggaggtcattggttgcatgattaatgtgatt |
100 |
Q |
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| T |
4343291 |
tgacataattgaatgtaatcacatatgccagtgtccagc----------gccttcagcgtcggtggtatggaggtcattggttgcatgattaatgtgatt |
4343380 |
T |
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| Q |
101 |
gataatgataagtgcctttttatttgttactaaaaaagttacatcagattcagttaaaggcaaagctaactgtttcacaattatgacaaataatgttaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4343381 |
gataatgataagtgcctttttatttgttactaaaaaagttacatcagattcagttaaaggcaaagctaactgtttcacaattatgacaaataattttaca |
4343480 |
T |
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| Q |
201 |
gtacaagtgttttcatgacattagaatgttgttaattgaagtatgattactgctttttcttttgaatgtatgatgatttcgtttccatggtacatttctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4343481 |
gtacaagtgttttcatgacattagaatgttgttaattgaagtatgattactgctttttcttttgaatgtatgatgatttcgtttccatggtacatttctg |
4343580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 263
Target Start/End: Original strand, 4344027 - 4344186
Alignment:
| Q |
105 |
atgataagtgcctttttatttgttactaaaaaagttacatcagattcagttaaaggcaaagctaactgtttcacaattatgacaaataatgttacagtac |
204 |
Q |
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|||| ||||||||||||| | || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || | |||| |
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| T |
4344027 |
atgaaaagtgcctttttactatttgttaaaaaatttacatcagattcagttaaaggcaaagcttactgtttcacaattatgacagataacttttctgtac |
4344126 |
T |
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| Q |
205 |
aagtgtttt-catgacattagaatgttgttaattgaagtatgattactgctttttctttt |
263 |
Q |
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||||||||| || |||||||| |||||||| |||| |||||| || ||| ||||| |||| |
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| T |
4344127 |
aagtgttttccaagacattaggatgttgtttattgcagtatgttttctgatttttgtttt |
4344186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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