View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14056_high_3 (Length: 551)

Name: NF14056_high_3
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14056_high_3
NF14056_high_3
[»] chr1 (3 HSPs)
chr1 (5-534)||(20098109-20098645)
chr1 (5-247)||(33371672-33371902)
chr1 (389-425)||(33372015-33372051)
[»] scaffold0756 (2 HSPs)
scaffold0756 (49-300)||(3661-3909)
scaffold0756 (5-46)||(3470-3511)
[»] chr3 (2 HSPs)
chr3 (13-328)||(9875519-9875831)
chr3 (164-285)||(38840527-38840648)
[»] chr8 (1 HSPs)
chr8 (322-525)||(18493743-18493957)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 5 - 534
Target Start/End: Complemental strand, 20098645 - 20098109
Alignment:
Q  5 aggaaaatacaccaacccacacgcagattgagttctcaactaaatatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcac 104  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20098645 aggaaaatacaccaacccacacgcagattgagttctcaactacatatctgtttagcaataacaaaccttggcaggggaaagggtgtggactcctgagcac 20098546  T
Q  105 aattcaagaagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20098545 aattcaagaagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtc 20098446  T
Q  205 cagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaacttggttaagtcaggcttaaaggtcaccgtggtcgagtagtca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20098445 cagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaacttggttaagtcaggcttaaaggtcaccatggtcgagtagtca 20098346  T
Q  305 tcaacttcgcatttggttaccactcgctcaaacttaacattcatattattatggaattccttcataacacaaaaatacaaccaagacaaatggaaaatca 404  Q
    ||||||| |||      ||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  20098345 tcaactttgca------taccactcgctcaaacttaacatccatattattactgaactccttcataacacaaaaatacaaccaagacaaatggaaaatca 20098252  T
Q  405 aagaccaaaa-attttgagcac-----ttaag-------cagaaagaaaggaataactacctgtctcgaaatcccacattcatcagcaagctcaacccaa 491  Q
    |||||||||| | ||  |||||     | |||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20098251 aagaccaaaacaattaaagcaccaaaatcaagaatctcaaaggaagaaaggaataactacctgtctcgaaatcccacattcatcagcaagctcaacccaa 20098152  T
Q  492 aaacaagtcgagtaactattcgtgagatcaaaaatgtttatta 534  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  20098151 aaacaagtcgagtaactattcgtgagatcaaaattgtttatta 20098109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 33371672 - 33371902
Alignment:
Q  5 aggaaaatacaccaacccacacgcagattgagttctcaactaaatatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcac 104  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||| |         |||||    
T  33371672 aggaaaatacaccaacccacacgcagattgagttctcaactacatatcggtatagcaa---caaaccttggcaggggaaagggttt---------agcac 33371759  T
Q  105 aattcaagaagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtc 204  Q
     || ||||||||||| ||||||| |||| ||||| |||| |||||||||   || | | ||| ||||||||||||| |||||||||||| ||||||||||    
T  33371760 gatccaagaagaaattagcataatctttaaaagacttgactggaatcacagtgccgttgagtacaaccgtaacagtctcaccaaggcacactgccatgtc 33371859  T
Q  205 cagcacacgctttttcatcaaagctacaacgtcctcttcaaga 247  Q
    || ||||||||||||||||||||||| |||||||| |||||||    
T  33371860 caacacacgctttttcatcaaagctataacgtccttttcaaga 33371902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 33372015 - 33372051
Alignment:
Q  389 gacaaatggaaaatcaaagaccaaaaattttgagcac 425  Q
    |||||||||||||||||||||||||||||||||||||    
T  33372015 gacaaatggaaaatcaaagaccaaaaattttgagcac 33372051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 49 - 300
Target Start/End: Original strand, 3661 - 3909
Alignment:
Q  49 tatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcacaattcaagaagaaatcagcataacctttgaaagagttgaatgga 148  Q
    ||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  3661 tatctgtatagcaa---caaaccttggcaggggaaagggtttggactcctgagcacaattcaacaagaaatcagcataacctttgaaagacttgaatgga 3757  T
Q  149 atcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacacgctttttcatcaaagctacaacgtcctcttcaagac 248  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3758 atcacttcgccgattagttcaaccgtaacagtatcaccaaggcaccctgccatatccagcacacgctttttcatcaaagctacaacgtcctcttcaagac 3857  T
Q  249 aggtcatttcaaacttggttaagtcaggcttaaaggtcaccgtggtcgagta 300  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  3858 aggtcatctgaaacttggttaagtcaggcttaaaggtcaccgtggtcgagta 3909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 3470 - 3511
Alignment:
Q  5 aggaaaatacaccaacccacacgcagattgagttctcaacta 46  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3470 aggaaaatacaccaacccacacgcagattgagttctcaacta 3511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 9875519 - 9875831
Alignment:
Q  13 acaccaacccacacgcagattgagttctcaactaaatatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcacaattcaag 112  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||||   |||||||||||||||||  |||| |||||| || |||||| |||| |    
T  9875519 acaccaacccaaacgcagattgagttctcaactacatatctctatagcaa---caaaccttggcaggggactgggtttggacttctcagcacatttcagg 9875615  T
Q  113 aagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacac 212  Q
    ||||  ||||||||| |||||||||| || ||  ||||||||  || | | ||||||||| ||||||| |  ||||||||||||||||||||||||||||    
T  9875616 aagagctcagcataatctttgaaagacttaaaacgaatcactgtgccgttgagttcaaccttaacagtctttccaaggcaccctgccatgtccagcacac 9875715  T
Q  213 gctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaacttggttaagtcaggcttaaaggtcaccgtggtcgagtagtcatcaacttc 312  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||||||    ||||||||||||||||||||| ||||| |||  |||| | |||     
T  9875716 gctttttcatcaaagcaacaacgtcctcttcaagataggtcattttaaacttctccaagtcaggcttaaaggtcaccttggtccagttctcattagcttt 9875815  T
Q  313 gcatttggttaccact 328  Q
     |||||||||| ||||    
T  9875816 acatttggttatcact 9875831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 38840527 - 38840648
Alignment:
Q  164 agttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaact 263  Q
    ||||||||| ||||||| |  ||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||||||||||||| | |||||||  ||||    
T  38840527 agttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaact 38840626  T
Q  264 tggttaagtcaggcttaaaggt 285  Q
    |    |||||||||||||||||    
T  38840627 tttccaagtcaggcttaaaggt 38840648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 322 - 525
Target Start/End: Complemental strand, 18493957 - 18493743
Alignment:
Q  322 taccactcgctcaaacttaacattcatattattatggaattccttcataacacaaaaatacaaccaagacaaatggaaaatcaaagaccaaaaattttga 421  Q
    ||||||||||||||||||| ||| ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  18493957 taccactcgctcaaacttagcatccatattattaccgaactccttcataacacaaaaatacaaccaagacaaatggaaaatcaaagaccaaaaattaa-a 18493859  T
Q  422 gcacttaagc------------agaaagaaaggaataactacctgtctcgaaatcccacattcatcagcaagctcaacccaaaaacaagtcgagtaacta 509  Q
    ||||  ||              || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  18493858 gcaccaaaatcaaaaatctcaaaggaagaaaggaataactacctgtctcgaaatcccccattcatcagcaagctcaaccaaaaaacaagtcgagtaacta 18493759  T
Q  510 ttcgtgagatcaaaaa 525  Q
    ||||||||||||||||    
T  18493758 ttcgtgagatcaaaaa 18493743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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