View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_high_4 (Length: 502)
Name: NF14056_high_4
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 43664534 - 43664058
Alignment:
| Q |
16 |
gaaaagacaattaacaacttgttttgaatttctgtcataataacatgttttaaattttagatgttttctgattgtgattccttgtgattatgaactgtca |
115 |
Q |
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| T |
43664534 |
gaaaagacaattaacaacttgttttgaatttctgtcataataacatgttttaaattttagatgttttctgattgtgattccttgtgattatgaactgtca |
43664435 |
T |
|
| Q |
116 |
attttaattatgtaattattaaattaatattggaataaaggtgcagatgagatgatgtagttgcttatataccatattctagtttaatcctttatgataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
43664434 |
attttaattatgtaattattaaattaatattggaataaaggtgcagatgagatgatgtagttgcttatataccatattctagtttaatcc-ttataataa |
43664336 |
T |
|
| Q |
216 |
aatatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaattcattcacttttgagttgcaatttcctgacagcagtt |
315 |
Q |
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| T |
43664335 |
tatatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaattcattcacttttgagttgcaatttcctgacagcagtt |
43664236 |
T |
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| Q |
316 |
tagctttctcgtgatgctctttcttttgaagtccaaaatctgt----------ttcttcaattattatccatttctttcctaaagagagaatagttacta |
405 |
Q |
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| T |
43664235 |
tagctttctcgtgatgttctttgttttgaagtcc-aaatctgtttctttaatgttcttcaattattattcatttctttcctaaagagagaatagttacta |
43664137 |
T |
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| Q |
406 |
aaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaatgcaagttaaactaacactaatcttgtgttattatttgttca |
494 |
Q |
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| T |
43664136 |
aaagtgcttaaaatt----------aaagtcaagaaactttatgcaatgcaagttaaactaacactaatcttgtgttattatttgttca |
43664058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 358 - 494
Target Start/End: Original strand, 24559738 - 24559874
Alignment:
| Q |
358 |
tttcttcaattattatccatttctttcctaaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaatgcaa |
457 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24559738 |
tttcttcaattattattcatttctttcctaaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatacaatgcaa |
24559837 |
T |
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| Q |
458 |
gttaaactaacactaatcttgtgttattatttgttca |
494 |
Q |
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| T |
24559838 |
gttaaactaacactaatcttgtgttattatttgttca |
24559874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 51815327 - 51815461
Alignment:
| Q |
178 |
gcttatataccatattctagtttaatcctttatgataaaatatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaa |
277 |
Q |
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|||||||||||||||| |||| |||||||| || ||||||||| ||||||||||||||||||||||||||| || || || |||| |||||||||||| |
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| T |
51815327 |
gcttatataccatattttagtctaatcctt-ataataaaatatataaaagatactatccaatgtttgaggtcatacttcatgtacaatgattgaatttat |
51815425 |
T |
|
| Q |
278 |
ttcattcacttttgagttgcaatttcctgacagcag |
313 |
Q |
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| T |
51815426 |
ttcattcacttttgagttgcaatttcctgacagcag |
51815461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 412
Target Start/End: Original strand, 51815510 - 51815564
Alignment:
| Q |
358 |
tttcttcaattattatccatttctttcctaaagagagaatagttactaaaagtgc |
412 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
51815510 |
tttcttcaactattatccatttctttcctaaagagagaagagttaataaaagtgc |
51815564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 387 - 452
Target Start/End: Complemental strand, 19138577 - 19138512
Alignment:
| Q |
387 |
aaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaa |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
19138577 |
aaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtaaagtaactttatgcaa |
19138512 |
T |
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