View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_1 (Length: 775)
Name: NF14056_low_1
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 10 - 722
Target Start/End: Original strand, 15640255 - 15640969
Alignment:
| Q |
10 |
atgagatgttgtacctgaaaacagggtagactgcttccatataagctggttctgtgttaggagagaatataccacacaagtgggccaagattgcatatac |
109 |
Q |
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| T |
15640255 |
atgagatattgtacctgaaaacagggtagactgcttccatataagctggttctgtgttaggagagaatataccacacaagtgggccaagattgcatatac |
15640354 |
T |
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| Q |
110 |
acaaaacaaagatacaaaacaacctgtacataaccctgtagagaaaataaaattataaaatcaattaaggtttaatgtctggaattaataataaactata |
209 |
Q |
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| T |
15640355 |
gcaaaacaaagatacaaaacaacctgtacataaccctgcagagaaaataaaattaaaaaatcaattaaggtttaatgtatggaattaataataaactatg |
15640454 |
T |
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| Q |
210 |
tttatcacacttagtggccactatgtgacaatcacatcagatagaaaataaaatgctttaatannnnnnnnnnaaccttatgattttcagaagaacgcga |
309 |
Q |
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| T |
15640455 |
tttatcacacttagtggccactatgtgacaatcacatcagatagaaaataaaatgctttaata-tttttttttaatcttatgattctcagaaaaacgcga |
15640553 |
T |
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| Q |
310 |
ccatgataatttaaagttcggtgttaggaagtataatatgatcaagaataatatttcgatttgggacaataata--nnnnnnnatacaagtaggacaata |
407 |
Q |
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| T |
15640554 |
ccatgataatttaaagttcggtgttaggaagtataatatgatcaagaataatattccgatttgggacaataatatttttttttatacaagtaggataata |
15640653 |
T |
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| Q |
408 |
aaacaaatatataaacnnnnnnnattgctaatataattaattctaattca-caatgtagacataga-ttgatatagtggaagttattaccgacaaagaag |
505 |
Q |
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| T |
15640654 |
aaacaaatatataaac-ttttttattgctataataattaattcgaattcattaatatagacatatatttgatacagtggaagttattaccgacaaagaag |
15640752 |
T |
|
| Q |
506 |
gtgaccatatgagaacctttctgcacttgaggttttaaaaacttcattgccttttttctatcattgctagcaaagtgctttgtgaatatggattccactt |
605 |
Q |
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| T |
15640753 |
gtgaccatatgagaacctttctgcacttgaggttttaaaaacttcattgccttttttctatcattgctagcaaagtgctttgtgaatatggattccactt |
15640852 |
T |
|
| Q |
606 |
catccattagtctaacaacctttcataatcaaaatattatattgcaattaatcaccaattattgcatgatcacatatcacataatcattatacactctct |
705 |
Q |
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| T |
15640853 |
catccattagtctaacaacctttcataatcaaaatattatattacaattaatcaccaattattgtatgatcacagatcacataatcattatacactctct |
15640952 |
T |
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| Q |
706 |
tatggatacaaatgtgt |
722 |
Q |
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| T |
15640953 |
tatggatacaaatgtgt |
15640969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 490 - 626
Target Start/End: Complemental strand, 33518267 - 33518131
Alignment:
| Q |
490 |
attaccgacaaagaaggtgaccatatgagaacctttctgcacttgaggttttaaaaacttcattgccttttttctatcattgctagcaaagtgctttgtg |
589 |
Q |
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| T |
33518267 |
attaccgacaagaaaagtgaccatatgagaatctttatgttgttggggtcttaaaaacttcattgcctttttcctgtcattgttggcgaagtgctttgtg |
33518168 |
T |
|
| Q |
590 |
aatatggattccacttcatccattagtctaacaacct |
626 |
Q |
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| T |
33518167 |
aatatggattccacttcgtccatttgtctaagaacct |
33518131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 33518816 - 33518687
Alignment:
| Q |
18 |
ttgtacctgaaaacagggtagactgcttccatataagctggttctgtgttaggagagaatataccacacaagtgggccaagattgcatatacacaaaaca |
117 |
Q |
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| T |
33518816 |
ttgtacctgaaaacaggatagacattttgcatataagctgactcattgctaggagagaatatggcgcacaaatgagccaaaattgcgtatacacaaaaca |
33518717 |
T |
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| Q |
118 |
aagatacaaaacaacctgtacataaccctg |
147 |
Q |
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| T |
33518716 |
atgaaacaaaacaacctgtagacaaccctg |
33518687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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