View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_13 (Length: 330)
Name: NF14056_low_13
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 8994075 - 8994189
Alignment:
| Q |
14 |
caatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttct |
113 |
Q |
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| T |
8994075 |
caatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttct |
8994174 |
T |
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| Q |
114 |
tcgattaaaagatat |
128 |
Q |
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| T |
8994175 |
tcgattaaaagatat |
8994189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 9028732 - 9028846
Alignment:
| Q |
14 |
caatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9028732 |
caatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttct |
9028831 |
T |
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| Q |
114 |
tcgattaaaagatat |
128 |
Q |
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| T |
9028832 |
tcgattaaaagatat |
9028846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 8994203 - 8994330
Alignment:
| Q |
196 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
295 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8994203 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
8994302 |
T |
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| Q |
296 |
tcagggattctctctcatgttgtctctg |
323 |
Q |
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| T |
8994303 |
tcagggattctctctcgtgttgtttctg |
8994330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 9028860 - 9028987
Alignment:
| Q |
196 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
295 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9028860 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
9028959 |
T |
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| Q |
296 |
tcagggattctctctcatgttgtctctg |
323 |
Q |
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| T |
9028960 |
tcagggattctctctcgtgttgtttctg |
9028987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 9019407 - 9019458
Alignment:
| Q |
182 |
ccttctccttctcgacgcagattgttcctgttcttctcaaaaccagatactg |
233 |
Q |
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||||| |||||||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
9019407 |
ccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactg |
9019458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 149 - 318
Target Start/End: Complemental strand, 44884348 - 44884173
Alignment:
| Q |
149 |
atgataaaagagtatgatcatttgtcgtcaaacccttctccttc------tcgacgcagattgttcctgttcttctcaaaaccagatactgatgtttcca |
242 |
Q |
| |
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|||||| | |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
44884348 |
atgatagatgagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttcca |
44884249 |
T |
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| Q |
243 |
tgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttgt |
318 |
Q |
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|||| |||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| |
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| T |
44884248 |
tgggaaatggtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttgt |
44884173 |
T |
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