View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_14 (Length: 328)
Name: NF14056_low_14
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_14 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 40783123 - 40782827
Alignment:
| Q |
13 |
aatatatgagatgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatctaagagtgagca-taaattaaaggaggaaaca |
111 |
Q |
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| T |
40783123 |
aatatatgagatgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttctatctaagagtgagcaataaattaaaggaggaaaca |
40783024 |
T |
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| Q |
112 |
tgatgaggttgtgttgtttgtgagcatgcgcacacatacacatgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacg |
211 |
Q |
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| T |
40783023 |
tgatgaggttgtgttgtttgtgagcatgcgcacacataca--tgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacg |
40782926 |
T |
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| Q |
212 |
tgaagatggtcgaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaa |
310 |
Q |
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| T |
40782925 |
tgaagatggtcgaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaa |
40782827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 10990 - 10888
Alignment:
| Q |
208 |
cacgtgaagatggtcgaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
307 |
Q |
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| T |
10990 |
cacgtgaagatggtcgaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
10891 |
T |
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| Q |
308 |
taa |
310 |
Q |
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| T |
10890 |
taa |
10888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 48661237 - 48661108
Alignment:
| Q |
26 |
agatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatc-taa--gagtgagcataaattaaaggaggaaacatgatg--aggt |
120 |
Q |
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| T |
48661237 |
agatgtgaaatccttgtttt-gatccaatttaatttaacttagatattttagagcatgagtgagtgagcataaattaaaggatacataatgatgttgtgt |
48661139 |
T |
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| Q |
121 |
tgtgttgtttgtgagcatgcgcacacataca |
151 |
Q |
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| T |
48661138 |
tgttttgtttgtgagcatgtgcacacataca |
48661108 |
T |
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