View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_15 (Length: 321)
Name: NF14056_low_15
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 8342532 - 8342234
Alignment:
| Q |
1 |
ctcataaatggaacgtttccaaaaggcctagtttaaccatgttgtctttttaatagaaacgcagtggatactgttgttgcctccacctccaacggtggtg |
100 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8342532 |
ctcataaatggaacgtttccaaatggcctagcttaaccatgttgtctttttaatagaaacgcagtggatactgttgttgcctccacctccaatggtggtg |
8342433 |
T |
|
| Q |
101 |
gatgtgccgtctcctgtcgttttggaggca--caactccgaggccaatcatattagacacaccctctgtcttccggcctcacttttcgatagaattgata |
198 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8342432 |
gatgtgccgtctcctgtcgttttggaggcatgccactccgaggccaatcatatcagacacaccctctgtcttccggcctcacttttcgatagaattgata |
8342333 |
T |
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| Q |
199 |
cctcgccaattca--ctctataaatcgaagaggttctcaaatgtaactagcagattgctacttatatttcaataataatcaagaggaatttcagttatg |
295 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8342332 |
cctcaccaattcactctctataaatcgaagaggttctcaaatgtaactagcagattgctacttatatttcaataataatcaagaggaatttcagttatg |
8342234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 93 - 295
Target Start/End: Original strand, 3228110 - 3228315
Alignment:
| Q |
93 |
cggtggtggatgtgccgtctcctgtcgttttggaggca--caactccgaggccaatcatattagacacaccctctgtcttccggcctcacttttcgatag |
190 |
Q |
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||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||| |||| |
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| T |
3228110 |
cggtggtggatgtgccgactcctgtcattttggaggcatgccactccgaggccaatcatatcagaaacacc-tctgtcttccgacctcacttttcaatag |
3228208 |
T |
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| Q |
191 |
aattgatacctcgccaattcactct--ataaatcgaagaggttctcaaatgtaactagcagattgctacttatatttcaataataatcaagaggaatttc |
288 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3228209 |
aattgatacctcgccaattcactctctataaatcgaagaggttcccagatgtaactggcagattgctacttatatttcaataataatcaagaggaatttc |
3228308 |
T |
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| Q |
289 |
agttatg |
295 |
Q |
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||||||| |
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| T |
3228309 |
agttatg |
3228315 |
T |
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