View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_18 (Length: 284)
Name: NF14056_low_18
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 6514054 - 6513783
Alignment:
| Q |
1 |
ggtaacaaataaatatgtggtcaaaacaagcttat----gagacaaatccaacactatcaacataattaaaaaataaaacatcgtaattaatagtagcaa |
96 |
Q |
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| T |
6514054 |
ggtaacaaataaatatgtggtcaaaacaagcttatatatgagacaaatccaacactatcaacataattaaaaaataaaacattgtaattaatagtagcaa |
6513955 |
T |
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| Q |
97 |
tgccaccattataaatccaacaacatttaacaagtctcaaactaaaactcaccgacataaaacaaatctcaatgaatctaacaaccaaggagttggagcg |
196 |
Q |
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| T |
6513954 |
tgccaccattataaatccaacaacatttaacaagtctcaaactaaaactcaccgacctaaaacaaatctcaatgaatctaacaaccaaggagttggagcg |
6513855 |
T |
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| Q |
197 |
gaggcaatgacgatccctagtaagcacaatggaagcagtgctcttctcactgtctcattaaaagagtttctt |
268 |
Q |
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| T |
6513854 |
gaggcaatgacgatccctagtaagcacaacagaagcagtgctctcctcactgtctcattaaaagagtttctt |
6513783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 39854098 - 39854026
Alignment:
| Q |
23 |
aaaacaagcttatgagacaaatccaacactatcaacataattaaaaaataaaacatcgtaattaatagtagca |
95 |
Q |
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| T |
39854098 |
aaaacaagcttatgagacaaatccaacatcatcaacatagttaagaaatacaacatcacaattaatagcagca |
39854026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13055951 - 13056058
Alignment:
| Q |
1 |
ggtaacaaataaatatgtggtcaaaacaagcttatgagacaaatccaacactatcaacataattaa-aaaataaaacatcgtaattaatagtagcaatgc |
99 |
Q |
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| T |
13055951 |
ggtatcaaataaatttgtggtagatacaagcttaggagacaaatccaacaccatcaacataattaacaaaatcaaa-atcataatcaatagcaacaatgc |
13056049 |
T |
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| Q |
100 |
caccattat |
108 |
Q |
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||| ||||| |
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| T |
13056050 |
cacaattat |
13056058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 32918369 - 32918287
Alignment:
| Q |
55 |
caacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaa |
137 |
Q |
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|||||||||||| |||| | |||| |||||||||| | |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
32918369 |
caacataattaacaaatgtagcatcataattaatagcaataatgtgaccattataaatccaacaacattaaacaagtctcaaa |
32918287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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