View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_19 (Length: 264)
Name: NF14056_low_19
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 48168709 - 48168849
Alignment:
| Q |
13 |
aatattatgatatacaattagattgaactgaatagtgaataacctgtttgattgtcctaatatatagatctctacccatctcctggtacatggata-gca |
111 |
Q |
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| T |
48168709 |
aatattatgatatacaattagattgaactgaatagtgaataacctgtttgattgtcctaatatatagatctctacccatctcctggtacatggatatgca |
48168808 |
T |
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| Q |
112 |
tgttcgtaagaaactcttgtattttcttataataatataaa |
152 |
Q |
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| T |
48168809 |
tgttcgtaagaaactcttgtattttcttataataatataaa |
48168849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 48170317 - 48170432
Alignment:
| Q |
144 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48170317 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
48170416 |
T |
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| Q |
244 |
aattatatttatgatt |
259 |
Q |
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|||||||||||||||| |
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| T |
48170417 |
aattatatttatgatt |
48170432 |
T |
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