View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14056_low_2 (Length: 605)
Name: NF14056_low_2
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 47419911 - 47419319
Alignment:
| Q |
1 |
accaacatactcaaacaaatacagttcaagatcctgtctttaaccatgaggcaatcaaaataaataatcccaactgtgaatctctcagcatgcaaagctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47419911 |
accaacatactcaaacaaatacagttcaagatcctgtctttaaccatgaggcaatcaaaacaaataatcccaactgtgaatctctcagcatgcaaagctg |
47419812 |
T |
|
| Q |
101 |
cagcagatgagtaatcaacaagccacagtcaatgaacaaccgagtagccaagtcaatcgtagtaaacaggtaccatttggcttgttgcttcctatcttga |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419811 |
cagcagatgagtaatcaacaagccacaatcaatgaacaaccgagtagccaagtcaatcgtagtaaacaggtaccatttggcttgttgcttcctatcttga |
47419712 |
T |
|
| Q |
201 |
ttccccaacttcctaaggacagggccatgcaacttcaaactttatttgataaattgaaggtgggtttctcaatccagtttcactatcatgtcctttttcc |
300 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419711 |
ttcgccaacttcccaaggacagggccatgcaacttcaaactttatttaataaattgaaggtgggtttctcaatccagtttcactatcatgtcctttttcc |
47419612 |
T |
|
| Q |
301 |
atctcttccgtgctaaactactaaagtttgttgtgcaaggcttgttcatattactaagtttttggttttgtcaattttttgttgtcattcg-tatagaga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
47419611 |
atctcttccgtgctaaactactaaagtttgttgtgcaaggcttgttcatattactaagtttttggttttgtcaa--ttttgttgtcattcgttatagaga |
47419514 |
T |
|
| Q |
400 |
gatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggta |
499 |
Q |
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| T |
47419513 |
gatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggta |
47419414 |
T |
|
| Q |
500 |
gaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47419413 |
gaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
47419319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 28 - 594
Target Start/End: Complemental strand, 47391517 - 47390956
Alignment:
| Q |
28 |
aagatcctgtctttaaccatgaggcaatcaaaataaataatcccaactgtgaatc-tctcagcatgcaaagctgcagcagatgagtaatcaacaagccac |
126 |
Q |
| |
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|||| ||||| |||||| | ||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| | |
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| T |
47391517 |
aagaacctgtttttaacaacgaggcaatcaaaacaaataatcccaa---tgaacaatctcagtatgcaaagctgcagcagatgagtaatcaacaggcctc |
47391421 |
T |
|
| Q |
127 |
agtcaatgaacaaccgagtagccaagtcaatcgtagtaaacaggtaccatttggcttgttgcttcctatcttgattccccaacttcctaaggacagggcc |
226 |
Q |
| |
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||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
47391420 |
ggtcaacgaacaacctattagccaagtcaatcgtagtaaacaggtaccatttggcttgttgctccctatattgattccccaacttcccaaggacagggca |
47391321 |
T |
|
| Q |
227 |
atgcaacttcaaactttatttgataaattgaaggtgggtttctcaatccagtttcactatcatgtcctttttccatctcttccgtgctaaactactaaag |
326 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| | ||||||||||||||||||| |
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| T |
47391320 |
atgcaacttcaaactttatttaacaaattgaaggtgggtttctcaaaccagtttca-tatcatgtcctttttccctctatgccgtgctaaactactaaag |
47391222 |
T |
|
| Q |
327 |
tttgttgtgcaaggcttgttcatattactaagtttttggttttgtcaattttttgttgtcattcgtatagagagatgaaatacccaaagaacattttgta |
426 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||| |
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|
| T |
47391221 |
tttgttgtgcaaggctttttcatatttctaagtttttcattttgtcaatttc--gttgtcatttgtctagagagatgaaatacctaaagaacattttgta |
47391124 |
T |
|
| Q |
427 |
cggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatgttttttcttaaggtggtt |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||| |
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|
| T |
47391123 |
cggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtaggcagaatagatgatttttcctaaggtggtt |
47391024 |
T |
|
| Q |
527 |
agagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
594 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||| |
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|
| T |
47391023 |
agagatagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttct |
47390956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 200 - 594
Target Start/End: Complemental strand, 47422184 - 47421775
Alignment:
| Q |
200 |
attccccaacttcctaaggacagggccatgcaacttcaaactttatttgataaattgaaggtgggtttctcaatccagtttcactatcatgtcctttttc |
299 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
47422184 |
attctccaacttcccaaggacaaggccatgcaacttcaaactttatttaataaattgaaggtgggtttctcaaaccagtttcaccatcatgtcctttttc |
47422085 |
T |
|
| Q |
300 |
catctcttccgtgctaaactactaaagtttgttgtgcaaggcttgttcatattactaagtttttggttttgtcaattttttgttgtcattcg-tatagag |
398 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
47422084 |
cctctcttccgtgcttaactactaaagtttgttgtgcaaggcttgttcatatcactaagtttttggttttgtcaa--ttttgttgtcattcgttatagag |
47421987 |
T |
|
| Q |
399 |
agatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggt |
498 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47421986 |
agatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtaggt |
47421887 |
T |
|
| Q |
499 |
agaatag--------------------atgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaa |
578 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
47421886 |
agaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----acaaa |
47421791 |
T |
|
| Q |
579 |
aaccaacacaggttct |
594 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
47421790 |
aaccaatacaggttct |
47421775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 112 - 501
Target Start/End: Complemental strand, 47408575 - 47408183
Alignment:
| Q |
112 |
taatcaacaagccacagtcaatgaacaaccgagtagccaagtcaatcgtagtaaacaggtaccatttggcttgttgcttcctatcttgattccccaactt |
211 |
Q |
| |
|
||||||| ||||| |||||||||||||||| ||||||||| ||||||||| ||||||||| ||| ||||||||||||| |||||| | |||||||||||| |
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|
| T |
47408575 |
taatcaagaagccgcagtcaatgaacaacctagtagccaaatcaatcgtaataaacaggtgccaattggcttgttgctccctatcataattccccaactt |
47408476 |
T |
|
| Q |
212 |
cctaaggacagggccatgcaacttcaaactttatttgataaattgaaggtgggtttctcaatccagtttcactatcatgtcctttttccatctcttccgt |
311 |
Q |
| |
|
| | |||| ||||| |||||||||||||| | || ||||||||||| ||||||||| ||||||| |||||||||| ||||||| | |||| || |
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|
| T |
47408475 |
gccgaagacaaagccattgaacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtcttttttccctttcttttgt |
47408376 |
T |
|
| Q |
312 |
gctaaactactaa----agtttgttgtgcaaggcttgttcatattactaagtttttggttttgtcaattttttgttgtcattcgta-tagagagatgaaa |
406 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||| |
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|
| T |
47408375 |
gctaaactactaactaaagtttgttgtgcgaggctttttcatattactaaatttttggttttgtcaatttt--gttgtcatttgttctagagagatgaaa |
47408278 |
T |
|
| Q |
407 |
tacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtaga |
501 |
Q |
| |
|
|| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||| ||||||||||||||| |
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|
| T |
47408277 |
tatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtaggtaga |
47408183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 508
Target Start/End: Complemental strand, 47424771 - 47424609
Alignment:
| Q |
345 |
ttcatattactaagtttttggttttgtcaattttttgttgtcattcgta-tagagagatgaaatacccaaagaacattttgtacggcttatgaaagggat |
443 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||| | ||||||| || |||||||||||| | ||||| | || |||||||||||||||||||| || |
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|
| T |
47424771 |
ttcatgttactaagttttttgtcttgtcaatttt--gatgtcatttgttctagagagatgaagtgtccaaacatcaatttgtacggcttatgaaaggcat |
47424674 |
T |
|
| Q |
444 |
tgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatg |
508 |
Q |
| |
|
||||||| | |||||||||| | ||||| || ||||||| ||||||||| ||||| |||||| |
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|
| T |
47424673 |
tgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacgtagattagatg |
47424609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 47425288 - 47425227
Alignment:
| Q |
231 |
aacttcaaactttatttgataaattgaaggtgggtttctcaatccagtttcactatcatgtc |
292 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
47425288 |
aacttcaaactttatttgacaaattgaaggtgtgtttctcaaatcagtttcactatcatgtc |
47425227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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