View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14056_low_22 (Length: 240)

Name: NF14056_low_22
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14056_low_22
NF14056_low_22
[»] chr6 (9 HSPs)
chr6 (8-240)||(25515881-25516114)
chr6 (49-108)||(26064363-26064422)
chr6 (49-108)||(26084332-26084391)
chr6 (121-217)||(1227928-1228029)
chr6 (121-217)||(21544382-21544483)
chr6 (167-217)||(10343735-10343788)
chr6 (69-108)||(25516086-25516125)
chr6 (168-217)||(2270736-2270788)
chr6 (121-157)||(24062393-24062429)
[»] chr5 (11 HSPs)
chr5 (121-198)||(16920613-16920691)
chr5 (121-217)||(30916734-30916832)
chr5 (121-217)||(4561625-4561726)
chr5 (121-217)||(41123166-41123267)
chr5 (121-217)||(11721518-11721619)
chr5 (167-198)||(10819454-10819485)
chr5 (167-217)||(28796567-28796620)
chr5 (168-217)||(23159686-23159738)
chr5 (121-158)||(4221964-4222001)
chr5 (167-217)||(42097730-42097782)
chr5 (121-158)||(9227080-9227119)
[»] chr1 (5 HSPs)
chr1 (121-217)||(21770975-21771075)
chr1 (167-217)||(19967814-19967867)
chr1 (123-156)||(27794383-27794416)
chr1 (121-149)||(36343391-36343419)
chr1 (121-157)||(46561409-46561445)
[»] scaffold0022 (1 HSPs)
scaffold0022 (121-217)||(63054-63155)
[»] chr8 (8 HSPs)
chr8 (121-217)||(11830427-11830528)
chr8 (121-217)||(12478825-12478926)
chr8 (121-217)||(13558793-13558894)
chr8 (121-217)||(32684584-32684685)
chr8 (121-217)||(25653726-25653828)
chr8 (121-217)||(34845306-34845407)
chr8 (167-217)||(41509450-41509503)
chr8 (121-158)||(43945382-43945420)
[»] chr4 (6 HSPs)
chr4 (121-217)||(49166896-49166997)
chr4 (121-217)||(3652523-3652623)
chr4 (167-217)||(4103008-4103061)
chr4 (167-217)||(29104413-29104466)
chr4 (167-217)||(36395405-36395458)
chr4 (121-158)||(13334845-13334884)
[»] chr3 (11 HSPs)
chr3 (121-217)||(300419-300520)
chr3 (121-216)||(13041385-13041485)
chr3 (121-216)||(13049462-13049562)
chr3 (121-217)||(52839321-52839422)
chr3 (167-217)||(48689324-48689377)
chr3 (121-158)||(8355563-8355601)
chr3 (121-158)||(3841203-3841240)
chr3 (121-158)||(13468342-13468379)
chr3 (167-215)||(28735696-28735747)
chr3 (121-158)||(31341248-31341285)
chr3 (121-158)||(51252280-51252319)
[»] chr2 (11 HSPs)
chr2 (121-217)||(15543737-15543838)
chr2 (121-217)||(16139051-16139151)
chr2 (142-217)||(19272914-19272992)
chr2 (167-217)||(18756421-18756474)
chr2 (167-217)||(38128013-38128066)
chr2 (121-157)||(22535681-22535718)
chr2 (121-158)||(24413801-24413838)
chr2 (121-158)||(34181594-34181631)
chr2 (121-158)||(39341353-39341390)
chr2 (121-158)||(25227846-25227885)
chr2 (168-217)||(25293408-25293459)
[»] chr7 (8 HSPs)
chr7 (167-217)||(35158434-35158487)
chr7 (121-158)||(45633696-45633733)
chr7 (121-157)||(15037404-15037440)
chr7 (121-158)||(4675949-4675986)
chr7 (121-158)||(11352583-11352620)
chr7 (121-158)||(25622157-25622194)
chr7 (121-158)||(35097762-35097799)
chr7 (121-158)||(5909735-5909774)
[»] scaffold0092 (1 HSPs)
scaffold0092 (121-158)||(44581-44618)
[»] scaffold0002 (1 HSPs)
scaffold0002 (167-217)||(432466-432519)
[»] scaffold0026 (1 HSPs)
scaffold0026 (121-157)||(4484-4520)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 25515881 - 25516114
Alignment:
Q  8 ctaataactaagaactacatgaatgtgttaagctgcatatctcaaaaaagaggttaatgcagaaaatgaatatagtgagtttgtggttctaaatgtgttt 107  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25515881 ctaataactaagaactacatgaatgtgttaaactgcatacctcaaaaaagaggttaatgcagaaaatgaatatagtgagtttgtggttctaaatgtgttt 25515980  T
Q  108 tgggtnnnnnnnntgtaatataggtcatttctggtttccccc-tgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttgga 203  Q
    |||||          ||||||||||||||||||||||||||| |||||||||        |||||||||| || ||||||||||||||||||   |||||    
T  25515981 tgggtctcccac---taatataggtcatttctggtttcccccatgtaaaatattttttttgaatttcatccttataatttgaagattttttggttttgga 25516077  T
Q  204 ccttcgtggaaaatgaatatagcgagtttgtggttct 240  Q
    || ||||||||||||||||||||||||||||||||||    
T  25516078 ccatcgtggaaaatgaatatagcgagtttgtggttct 25516114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 26064363 - 26064422
Alignment:
Q  49 tcaaaaaagaggttaatgcagaaaatgaatatagtgagtttgtggttctaaatgtgtttt 108  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  26064363 tcaaataagaggttaatgcagaaagtgaatatagttagtttgtggttctaattgtgtttt 26064422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 26084332 - 26084391
Alignment:
Q  49 tcaaaaaagaggttaatgcagaaaatgaatatagtgagtttgtggttctaaatgtgtttt 108  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  26084332 tcaaataagaggttaatgcagaaagtgaatatagttagtttgtggttctaattgtgtttt 26084391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 1228029 - 1227928
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  1228029 tgtaatataggtcatttccggttttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 1227930  T
Q  216 at 217  Q
    ||    
T  1227929 at 1227928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 21544483 - 21544382
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  21544483 tgtaatataggtcatttccggttttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 21544384  T
Q  216 at 217  Q
    ||    
T  21544383 at 21544382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 10343788 - 10343735
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||||||||||||    
T  10343788 gaatttcatccttgtaatttgaagattttttggttttggaccttcgtggaaaat 10343735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 25516086 - 25516125
Alignment:
Q  69 gaaaatgaatatagtgagtttgtggttctaaatgtgtttt 108  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  25516086 gaaaatgaatatagcgagtttgtggttctaaatgtgtttt 25516125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 2270788 - 2270736
Alignment:
Q  168 aatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    ||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  2270788 aatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 2270736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 24062429 - 24062393
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaat 157  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  24062429 tgtaatataggtcatttctgattttcccctgtaaaat 24062393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 16920691 - 16920613
Alignment:
Q  121 tgtaatataggtcatttctggttt-ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg 198  Q
    |||||||||| ||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||    
T  16920691 tgtaatatagatcatttctggttttccccctgtaaaatattttttttgaatttcatctttgtaatttgaagattttttg 16920613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 30916832 - 30916734
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||||||||||| || |||||| |||||||||         ||||||||| |||||||||||||||||||||   |||||||||||||||||||    
T  30916832 tgtaatataggtcatttccggcttcccc-tgtaaaatatttttttttaatttcatccttgtaatttgaagattttttggttttggaccttcgtggaaaat 30916734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 4561625 - 4561726
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        || ||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  4561625 tgtaatataggtcatttccggtttatccccctgtaaaatatttcttttgactttcatccttgtaatttgaagattttttgattttggaccttcttggaaa 4561724  T
Q  216 at 217  Q
    ||    
T  4561725 at 4561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 41123166 - 41123267
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||| |||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  41123166 tgtaatataagtcatttccggttttcccccctgtaaaatagtttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 41123265  T
Q  216 at 217  Q
    ||    
T  41123266 at 41123267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 11721619 - 11721518
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||| ||||||||  ||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  11721619 tgtaatataagtcatttccagttttcccccctgtaaaatagtttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 11721520  T
Q  216 at 217  Q
    ||    
T  11721519 at 11721518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 198
Target Start/End: Original strand, 10819454 - 10819485
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg 198  Q
    ||||||||||||||||||||||||||||||||    
T  10819454 gaatttcatctttgtaatttgaagattttttg 10819485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 28796620 - 28796567
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||||||||||||||||||| |||||   |||||||||| ||||||||    
T  28796620 gaatttcatctttgtaatttgaagatattttggttttggaccttcatggaaaat 28796567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 23159738 - 23159686
Alignment:
Q  168 aatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    ||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  23159738 aatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 23159686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 4222001 - 4221964
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  4222001 tgtaatataggtcatttttggttttcccctgtaaaata 4221964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 42097730 - 42097782
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttt--tgttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||  | |||||||||| ||||||||    
T  42097730 gaatttcatccttgtaatttgaagatttttggttttggaccttcatggaaaat 42097782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 9227119 - 9227080
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaata 158  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  9227119 tgtaatataggtcatttctggttttcccccctgtaaaata 9227080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 21771075 - 21770975
Alignment:
Q  121 tgtaatataggtcatttctggtttccccc-tgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaa 216  Q
    |||||||||||||||||| |||||||||| |||||||||        |||||||||| |||||||||||||||||||||   |||||||||| |||||||    
T  21771075 tgtaatataggtcatttccggtttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaa 21770976  T
Q  217 t 217  Q
    |    
T  21770975 t 21770975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 19967867 - 19967814
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  19967867 gaatttcatccttgtaatttgaagattttttgattttggaccttcatggaaaat 19967814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 27794383 - 27794416
Alignment:
Q  123 taatataggtcatttctggtttccccctgtaaaa 156  Q
    |||||||||||||||| |||||||||||||||||    
T  27794383 taatataggtcatttccggtttccccctgtaaaa 27794416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 36343419 - 36343391
Alignment:
Q  121 tgtaatataggtcatttctggtttccccc 149  Q
    |||||||||||||||||||||||||||||    
T  36343419 tgtaatataggtcatttctggtttccccc 36343391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 46561409 - 46561445
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaat 157  Q
    |||||||||||||||||||||||| || |||||||||    
T  46561409 tgtaatataggtcatttctggttttcctctgtaaaat 46561445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 63054 - 63155
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  63054 tgtaatataggtcatttccggttttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 63153  T
Q  216 at 217  Q
    ||    
T  63154 at 63155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 11830528 - 11830427
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  11830528 tgtaatataggtcatttccggttttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 11830429  T
Q  216 at 217  Q
    ||    
T  11830428 at 11830427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 12478926 - 12478825
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  12478926 tgtaatataggtcatttccggttttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 12478827  T
Q  216 at 217  Q
    ||    
T  12478826 at 12478825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 13558894 - 13558793
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||| ||||||||||||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  13558894 tgtaatataagtcatttctggtttttccccctgtaaaatagtttttctgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 13558795  T
Q  216 at 217  Q
    ||    
T  13558794 at 13558793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 32684584 - 32684685
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||| |||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  32684584 tgtaatataagtcatttccggttttcccccctgtaaaatagtttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 32684683  T
Q  216 at 217  Q
    ||    
T  32684684 at 32684685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 25653726 - 25653828
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnn-gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaa 214  Q
    ||||||||||||||||| ||||||  ||||||||||||||         |||||||||| |||||||||||||||||||||   |||||||||| |||||    
T  25653726 tgtaatataggtcatttttggttttcccccctgtaaaatagttttttttgaatttcatccttgtaatttgaagattttttgattttggaccttcatggaa 25653825  T
Q  215 aat 217  Q
    |||    
T  25653826 aat 25653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 34845306 - 34845407
Alignment:
Q  121 tgtaatataggtcatttctggtttcccc--ctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||||| |||||| ||||| |||  ||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  34845306 tgtaatataggccatttccggttttccctcctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 34845405  T
Q  216 at 217  Q
    ||    
T  34845406 at 34845407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 41509450 - 41509503
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  41509450 gaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 41509503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 43945420 - 43945382
Alignment:
Q  121 tgtaatataggtcatttctggtttccc-cctgtaaaata 158  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  43945420 tgtaatataggtcatttctggtttccctcctgtaaaata 43945382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 49166997 - 49166896
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  49166997 tgtaatataggtcatttccggttttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 49166898  T
Q  216 at 217  Q
    ||    
T  49166897 at 49166896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 3652623 - 3652523
Alignment:
Q  121 tgtaatataggtcatttctggttt-ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaa 216  Q
    ||||||||| |||||||| ||||| ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| |||||||    
T  3652623 tgtaatataagtcatttccggttttccccctgtaaaatagtttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaa 3652524  T
Q  217 t 217  Q
    |    
T  3652523 t 3652523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 4103061 - 4103008
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| ||||| |||||||||||||||   |||||||||||||||||||    
T  4103061 gaatttcatccttgtattttgaagattttttggttttggaccttcgtggaaaat 4103008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 29104466 - 29104413
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  29104466 gaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 29104413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 36395405 - 36395458
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  36395405 gaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 36395458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 13334845 - 13334884
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaata 158  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  13334845 tgtaatataggtcatttctggttttcccccctgtaaaata 13334884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 300520 - 300419
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  300520 tgtaatataggtcatttccggtttttccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 300421  T
Q  216 at 217  Q
    ||    
T  300420 at 300419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 13041385 - 13041485
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||| |||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  13041385 tgtaatataagtcatttccggttttcccccctgtaaaatagttttttggaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 13041484  T
Q  216 a 216  Q
    |    
T  13041485 a 13041485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 13049462 - 13049562
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||| |||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  13049462 tgtaatataagtcatttccggttttcccccctgtaaaatagttttttggaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 13049561  T
Q  216 a 216  Q
    |    
T  13049562 a 13049562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 52839321 - 52839422
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    ||||||||| |||||||| | |||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  52839321 tgtaatataagtcatttccgattttcccccctgtaaaatagtttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 52839420  T
Q  216 at 217  Q
    ||    
T  52839421 at 52839422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 48689377 - 48689324
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  48689377 gaatttcatccttgtaatttgaagattttttgattttggaccttcatggaaaat 48689324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 8355601 - 8355563
Alignment:
Q  121 tgtaatataggtcatttctgg-tttccccctgtaaaata 158  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  8355601 tgtaatataggtcatttctggttttccccctgtaaaata 8355563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 3841203 - 3841240
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  3841203 tgtaatataggtcatttttggttttcccctgtaaaata 3841240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 13468379 - 13468342
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  13468379 tgtaatataggtcatttttggtttccccatgtaaaata 13468342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 28735747 - 28735696
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  28735747 gaatttcatccttgtaatttgaagattttttggttttggaccttcctggaaa 28735696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 31341248 - 31341285
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  31341248 tgtaatataggtcattttttgtttccccctgtaaaata 31341285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 51252319 - 51252280
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaata 158  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  51252319 tgtaatataggtcatttctggttttcccccctgtaaaata 51252280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 15543737 - 15543838
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaa 215  Q
    |||||||||||||||||| |||||  ||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||    
T  15543737 tgtaatataggtcatttccggttttcccccctgtaaaatattttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaa 15543836  T
Q  216 at 217  Q
    ||    
T  15543837 at 15543838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 16139151 - 16139051
Alignment:
Q  121 tgtaatataggtcatttctggttt-ccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaa 216  Q
    ||||||||||||||||| | |||| ||||||||||||||        || ||||||| |||||||||||||||||||||   |||||||||| |||||||    
T  16139151 tgtaatataggtcattttttgttttccccctgtaaaatattttttttgactttcatccttgtaatttgaagattttttggttttggaccttcatggaaaa 16139052  T
Q  217 t 217  Q
    |    
T  16139051 t 16139051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 19272992 - 19272914
Alignment:
Q  142 tttccccctgtaaaatannnnnnnngaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||||||||||        |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  19272992 tttccccctgtaaaatagtttttttgaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 19272914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 18756421 - 18756474
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    ||||||| ||||||||||||||||||||||||   |||||||||| ||||||||    
T  18756421 gaatttcgtctttgtaatttgaagattttttggttttggaccttcatggaaaat 18756474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 38128066 - 38128013
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  38128066 gaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 38128013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 22535718 - 22535681
Alignment:
Q  121 tgtaatataggtcatttctgg-tttccccctgtaaaat 157  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  22535718 tgtaatataggtcatttctggttttccccctgtaaaat 22535681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 24413838 - 24413801
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  24413838 tgtaatataagtcatttttggtttccccctgtaaaata 24413801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 34181594 - 34181631
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    |||||||||||||||||| | |||||||||||||||||    
T  34181594 tgtaatataggtcatttccgatttccccctgtaaaata 34181631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 39341390 - 39341353
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  39341390 tgtaatataggtcatttttggttttcccctgtaaaata 39341353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 25227846 - 25227885
Alignment:
Q  121 tgtaatataggtcatttctggttt--ccccctgtaaaata 158  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  25227846 tgtaatataggtcatttctggttttcccccctgtaaaata 25227885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 25293408 - 25293459
Alignment:
Q  168 aatttcatctttgtaatttgaagattttt--tgttggaccttcgtggaaaat 217  Q
    ||||||||| |||||||||||||||||||  | |||||||||| ||||||||    
T  25293408 aatttcatccttgtaatttgaagatttttgattttggaccttcatggaaaat 25293459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 35158487 - 35158434
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    ||||||||||||||||||||||||||||||||   |||||||||| ||||||||    
T  35158487 gaatttcatctttgtaatttgaagattttttggttttggaccttcatggaaaat 35158434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 45633733 - 45633696
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45633733 tgtaatataggtcatttttggtttccccctgtaaaata 45633696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 15037440 - 15037404
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaat 157  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15037440 tgtaatataggtcatttctggtttccccccgtaaaat 15037404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 4675949 - 4675986
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  4675949 tgtaatataggtcatttttggttttcccctgtaaaata 4675986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 11352620 - 11352583
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  11352620 tgtaatataggtcatttccggttcccccctgtaaaata 11352583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 25622157 - 25622194
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  25622157 tgtaatataggtcatttttggttttcccctgtaaaata 25622194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 35097799 - 35097762
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  35097799 tgtaatataggtcattttttgtttccccctgtaaaata 35097762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 5909735 - 5909774
Alignment:
Q  121 tgtaatataggtcatttctgg--tttccccctgtaaaata 158  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  5909735 tgtaatataggtcatttctggtttttccccctgtaaaata 5909774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 44618 - 44581
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaata 158  Q
    |||||||||||||||||||||||||| |||||||||||    
T  44618 tgtaatataggtcatttctggtttcctcctgtaaaata 44581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 432466 - 432519
Alignment:
Q  167 gaatttcatctttgtaatttgaagattttttg---ttggaccttcgtggaaaat 217  Q
    |||||||||| |||||||||||||||||||||   |||||||||| ||||||||    
T  432466 gaatttcatccttgtaatttgaagattttttggttttggaccttcatggaaaat 432519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 4484 - 4520
Alignment:
Q  121 tgtaatataggtcatttctggtttccccctgtaaaat 157  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  4484 tgtaatataggtcatttctgattttcccctgtaaaat 4520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University