View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_23 (Length: 209)
Name: NF14056_low_23
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 15284332 - 15284484
Alignment:
| Q |
41 |
aagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttg |
140 |
Q |
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| T |
15284332 |
aagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttg |
15284431 |
T |
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| Q |
141 |
agaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatgg |
193 |
Q |
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| T |
15284432 |
agaccagatggtcatgctggtgcttatatgaatccttttccatttgcaaatgg |
15284484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 15256839 - 15256758
Alignment:
| Q |
114 |
cttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggtg |
195 |
Q |
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| T |
15256839 |
cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatgtacccttttccatttgccaatggtg |
15256758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 15287516 - 15287431
Alignment:
| Q |
108 |
gaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatgg |
193 |
Q |
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| T |
15287516 |
gaggtgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatgg |
15287431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 15265357 - 15265294
Alignment:
| Q |
121 |
taacaaaattggcattgttgagaccagatggtcatgcaggtgcttatatgaatccttttccatt |
184 |
Q |
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| T |
15265357 |
taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttttccatt |
15265294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 15262929 - 15262983
Alignment:
| Q |
127 |
aattggcattgttgagaccagatggtcatgcaggtgcttatatgaatccttttcc |
181 |
Q |
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| T |
15262929 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatccttttcc |
15262983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 51383517 - 51383662
Alignment:
| Q |
41 |
aagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttg |
140 |
Q |
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| T |
51383517 |
aagaagtattgagatagaggaagtgaaaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgttg |
51383616 |
T |
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| Q |
141 |
agaccagatggtcatgcaggtgcttatatgaatccttttccatttg |
186 |
Q |
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| T |
51383617 |
agaccagatggtcatgcaggagcctacatgaatccttttccatttg |
51383662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 44248228 - 44248083
Alignment:
| Q |
41 |
aagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttg |
140 |
Q |
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| T |
44248228 |
aagaagtattgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattg |
44248129 |
T |
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| Q |
141 |
agaccagatggtcatgcaggtgcttatatgaatccttttccatttg |
186 |
Q |
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| T |
44248128 |
agaccagatggtcatgcaggagcttatatgaatccttttccatttg |
44248083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 11807146 - 11807001
Alignment:
| Q |
41 |
aagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttg |
140 |
Q |
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||||||| | ||||||||||||| |||||||||| || |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11807146 |
aagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttg |
11807047 |
T |
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| Q |
141 |
agaccagatggtcatgcaggtgcttatatgaatccttttccatttg |
186 |
Q |
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|||||||||||||||||||| ||||||| | ||||||||||||||| |
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| T |
11807046 |
agaccagatggtcatgcaggagcttataggtatccttttccatttg |
11807001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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