View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_3 (Length: 551)
Name: NF14056_low_3
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_3 |
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| [»] scaffold0756 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 5 - 534
Target Start/End: Complemental strand, 20098645 - 20098109
Alignment:
| Q |
5 |
aggaaaatacaccaacccacacgcagattgagttctcaactaaatatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20098645 |
aggaaaatacaccaacccacacgcagattgagttctcaactacatatctgtttagcaataacaaaccttggcaggggaaagggtgtggactcctgagcac |
20098546 |
T |
|
| Q |
105 |
aattcaagaagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20098545 |
aattcaagaagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtc |
20098446 |
T |
|
| Q |
205 |
cagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaacttggttaagtcaggcttaaaggtcaccgtggtcgagtagtca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20098445 |
cagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaacttggttaagtcaggcttaaaggtcaccatggtcgagtagtca |
20098346 |
T |
|
| Q |
305 |
tcaacttcgcatttggttaccactcgctcaaacttaacattcatattattatggaattccttcataacacaaaaatacaaccaagacaaatggaaaatca |
404 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20098345 |
tcaactttgca------taccactcgctcaaacttaacatccatattattactgaactccttcataacacaaaaatacaaccaagacaaatggaaaatca |
20098252 |
T |
|
| Q |
405 |
aagaccaaaa-attttgagcac-----ttaag-------cagaaagaaaggaataactacctgtctcgaaatcccacattcatcagcaagctcaacccaa |
491 |
Q |
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|||||||||| | || ||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20098251 |
aagaccaaaacaattaaagcaccaaaatcaagaatctcaaaggaagaaaggaataactacctgtctcgaaatcccacattcatcagcaagctcaacccaa |
20098152 |
T |
|
| Q |
492 |
aaacaagtcgagtaactattcgtgagatcaaaaatgtttatta |
534 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20098151 |
aaacaagtcgagtaactattcgtgagatcaaaattgtttatta |
20098109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 33371672 - 33371902
Alignment:
| Q |
5 |
aggaaaatacaccaacccacacgcagattgagttctcaactaaatatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcac |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| | ||||| |
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| T |
33371672 |
aggaaaatacaccaacccacacgcagattgagttctcaactacatatcggtatagcaa---caaaccttggcaggggaaagggttt---------agcac |
33371759 |
T |
|
| Q |
105 |
aattcaagaagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtc |
204 |
Q |
| |
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|| ||||||||||| ||||||| |||| ||||| |||| ||||||||| || | | ||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
33371760 |
gatccaagaagaaattagcataatctttaaaagacttgactggaatcacagtgccgttgagtacaaccgtaacagtctcaccaaggcacactgccatgtc |
33371859 |
T |
|
| Q |
205 |
cagcacacgctttttcatcaaagctacaacgtcctcttcaaga |
247 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
33371860 |
caacacacgctttttcatcaaagctataacgtccttttcaaga |
33371902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 33372015 - 33372051
Alignment:
| Q |
389 |
gacaaatggaaaatcaaagaccaaaaattttgagcac |
425 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
33372015 |
gacaaatggaaaatcaaagaccaaaaattttgagcac |
33372051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 49 - 300
Target Start/End: Original strand, 3661 - 3909
Alignment:
| Q |
49 |
tatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcacaattcaagaagaaatcagcataacctttgaaagagttgaatgga |
148 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
3661 |
tatctgtatagcaa---caaaccttggcaggggaaagggtttggactcctgagcacaattcaacaagaaatcagcataacctttgaaagacttgaatgga |
3757 |
T |
|
| Q |
149 |
atcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacacgctttttcatcaaagctacaacgtcctcttcaagac |
248 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3758 |
atcacttcgccgattagttcaaccgtaacagtatcaccaaggcaccctgccatatccagcacacgctttttcatcaaagctacaacgtcctcttcaagac |
3857 |
T |
|
| Q |
249 |
aggtcatttcaaacttggttaagtcaggcttaaaggtcaccgtggtcgagta |
300 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3858 |
aggtcatctgaaacttggttaagtcaggcttaaaggtcaccgtggtcgagta |
3909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 3470 - 3511
Alignment:
| Q |
5 |
aggaaaatacaccaacccacacgcagattgagttctcaacta |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3470 |
aggaaaatacaccaacccacacgcagattgagttctcaacta |
3511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 9875519 - 9875831
Alignment:
| Q |
13 |
acaccaacccacacgcagattgagttctcaactaaatatctgtatagcaataacaaaccttggcaggggaaagggtgtggactcctgagcacaattcaag |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||| |||||| || |||||| |||| | |
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|
| T |
9875519 |
acaccaacccaaacgcagattgagttctcaactacatatctctatagcaa---caaaccttggcaggggactgggtttggacttctcagcacatttcagg |
9875615 |
T |
|
| Q |
113 |
aagaaatcagcataacctttgaaagagttgaatggaatcacttcgctgattagttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacac |
212 |
Q |
| |
|
|||| ||||||||| |||||||||| || || |||||||| || | | ||||||||| ||||||| | |||||||||||||||||||||||||||| |
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|
| T |
9875616 |
aagagctcagcataatctttgaaagacttaaaacgaatcactgtgccgttgagttcaaccttaacagtctttccaaggcaccctgccatgtccagcacac |
9875715 |
T |
|
| Q |
213 |
gctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaacttggttaagtcaggcttaaaggtcaccgtggtcgagtagtcatcaacttc |
312 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||| ||| |||| | ||| |
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|
| T |
9875716 |
gctttttcatcaaagcaacaacgtcctcttcaagataggtcattttaaacttctccaagtcaggcttaaaggtcaccttggtccagttctcattagcttt |
9875815 |
T |
|
| Q |
313 |
gcatttggttaccact |
328 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
9875816 |
acatttggttatcact |
9875831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 38840527 - 38840648
Alignment:
| Q |
164 |
agttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaact |
263 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||||||||||||| | ||||||| |||| |
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|
| T |
38840527 |
agttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaact |
38840626 |
T |
|
| Q |
264 |
tggttaagtcaggcttaaaggt |
285 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
38840627 |
tttccaagtcaggcttaaaggt |
38840648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 322 - 525
Target Start/End: Complemental strand, 18493957 - 18493743
Alignment:
| Q |
322 |
taccactcgctcaaacttaacattcatattattatggaattccttcataacacaaaaatacaaccaagacaaatggaaaatcaaagaccaaaaattttga |
421 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18493957 |
taccactcgctcaaacttagcatccatattattaccgaactccttcataacacaaaaatacaaccaagacaaatggaaaatcaaagaccaaaaattaa-a |
18493859 |
T |
|
| Q |
422 |
gcacttaagc------------agaaagaaaggaataactacctgtctcgaaatcccacattcatcagcaagctcaacccaaaaacaagtcgagtaacta |
509 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18493858 |
gcaccaaaatcaaaaatctcaaaggaagaaaggaataactacctgtctcgaaatcccccattcatcagcaagctcaaccaaaaaacaagtcgagtaacta |
18493759 |
T |
|
| Q |
510 |
ttcgtgagatcaaaaa |
525 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18493758 |
ttcgtgagatcaaaaa |
18493743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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