View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14056_low_5 (Length: 406)

Name: NF14056_low_5
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14056_low_5
NF14056_low_5
[»] chr6 (4 HSPs)
chr6 (18-359)||(14264060-14264404)
chr6 (298-339)||(29677216-29677257)
chr6 (298-355)||(7309615-7309672)
chr6 (298-393)||(29675472-29675567)
[»] chr2 (3 HSPs)
chr2 (301-355)||(42729570-42729624)
chr2 (301-359)||(42736048-42736103)
chr2 (316-357)||(25559298-25559339)
[»] chr8 (2 HSPs)
chr8 (298-355)||(2077271-2077328)
chr8 (298-357)||(42835858-42835917)
[»] chr3 (2 HSPs)
chr3 (298-355)||(141910-141967)
chr3 (298-339)||(143255-143296)
[»] chr7 (2 HSPs)
chr7 (298-355)||(44554827-44554884)
chr7 (300-355)||(44553200-44553255)
[»] chr1 (2 HSPs)
chr1 (298-355)||(48492727-48492784)
chr1 (298-355)||(48494335-48494392)
[»] chr4 (1 HSPs)
chr4 (316-357)||(37106309-37106350)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 14264404 - 14264060
Alignment:
Q  18 taatgaaagtttgtgtcttatgaatataatgtaatctgcgatgcatccacggttggatgagcttaaattaaagttgaattttatatttacaagaaatatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  14264404 taatgaaagtttgtgtcttatgaatataatgtaatctgcgatgcatccacggtttgatgagcttaaattaaagttgaattttatatttacatgaaatatt 14264305  T
Q  118 actcgtgttagttgaattttacatcattgaaagagtcttaagatttttgttgttataaaaaatgtttgttttattgaatataattctatgtagtttatca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  14264304 actcgtgttagttgaattttacatcattgaaagagtcttaagatttttgttgttataaaaaatgttagttttactgaatataattctatgtagtttatca 14264205  T
Q  218 ataaactttgatttgtaattgagaagggtaggaataaatttcaaccattaaatcaaactgtttgattaagatt---nnnnnnnggcttaattaaacgttt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||          || ||||||||||||||    
T  14264204 ataaactttgatttgtaattgagaagggtaggaataaatttcaaccattagatcaaactgtttgattaggattaaaaaaaaaaggtttaattaaacgttt 14264105  T
Q  315 agtcccataacttaattgttgtttttattttggtcccataagtat 359  Q
     ||||||||||||||||| |||||| | |||||||||||||||||    
T  14264104 ggtcccataacttaattgctgttttcaatttggtcccataagtat 14264060  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 29677257 - 29677216
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttt 339  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  29677257 ggcttaattaaacgtttggtcccataacttaattgttgtttt 29677216  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 7309615 - 7309672
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    ||||||||||||| ||| ||||| ||||||| ||||||||||||||||  ||||||||    
T  7309615 ggcttaattaaacctttggtcccctaacttatttgttgtttttatttttatcccataa 7309672  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 29675472 - 29675567
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataagtatnnnnnnntttcgtttagtccctcatgttcatctc 393  Q
    |||||||||||||||||  ||||||||||||||| |||||||   |||||||| |||| | |       || ||||||||||||||||| ||||||    
T  29675472 ggcttaattaaacgtttgatcccataacttaatttttgttttcgatttggtcctataactctaaattttttccgtttagtccctcatgtacatctc 29675567  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 42729570 - 42729624
Alignment:
Q  301 ttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  42729570 ttaattaaacgtttggtcccataacttaattgttgttttcattttggtcccataa 42729624  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 42736103 - 42736048
Alignment:
Q  301 ttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataagtat 359  Q
    |||||||||||||| |||||||||||||||   |||||| |||||||||||||||||||    
T  42736103 ttaattaaacgtttggtcccataacttaat---tgttttcattttggtcccataagtat 42736048  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 25559298 - 25559339
Alignment:
Q  316 gtcccataacttaattgttgtttttattttggtcccataagt 357  Q
    ||||| ||||| | ||||||||||||||||||||||||||||    
T  25559298 gtcccctaactaatttgttgtttttattttggtcccataagt 25559339  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 2077328 - 2077271
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    |||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||    
T  2077328 ggcttaattaaacgtttgatcccataacttaattgttgtttttgatttggtcccataa 2077271  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 42835858 - 42835917
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataagt 357  Q
    ||||||||| ||| ||| |||||  | |||| ||||||||||||||||||||||||||||    
T  42835858 ggcttaattgaacctttggtccctcatcttatttgttgtttttattttggtcccataagt 42835917  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 141910 - 141967
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    |||||||||||||||||  |||||||||||||||||||||||   |||||||||||||    
T  141910 ggcttaattaaacgtttgatcccataacttaattgttgttttcgatttggtcccataa 141967  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 143296 - 143255
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttt 339  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  143296 ggcttaattaaacgtttgatcccataacttaattgttgtttt 143255  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 44554884 - 44554827
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    ||||||||||||| ||| ||||  ||||||| |||||||||| |||||||||||||||    
T  44554884 ggcttaattaaacctttggtcctctaacttatttgttgttttcattttggtcccataa 44554827  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 44553200 - 44553255
Alignment:
Q  300 cttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    |||||||||||||||||||||  |||||| |||||||||| | ||||||| |||||    
T  44553200 cttaattaaacgtttagtccctcaacttatttgttgttttcaatttggtctcataa 44553255  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 48492727 - 48492784
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    ||||||||||||| ||| ||||  ||||||| |||||||||| |||||||||||||||    
T  48492727 ggcttaattaaacctttggtcctctaacttatttgttgttttcattttggtcccataa 48492784  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 48494392 - 48494335
Alignment:
Q  298 ggcttaattaaacgtttagtcccataacttaattgttgtttttattttggtcccataa 355  Q
    |||||||||||||||||||||||  |||||| |||||||||| | ||||||| |||||    
T  48494392 ggcttaattaaacgtttagtccctcaacttatttgttgttttcaatttggtctcataa 48494335  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 37106350 - 37106309
Alignment:
Q  316 gtcccataacttaattgttgtttttattttggtcccataagt 357  Q
    ||||| ||||| | ||||||||||||||||||||||||||||    
T  37106350 gtcccctaactaatttgttgtttttattttggtcccataagt 37106309  T

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