View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_6 (Length: 404)
Name: NF14056_low_6
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 37837576 - 37837949
Alignment:
| Q |
13 |
tcatcattcaatgtgtcacaatagagcaagataaggtttcaaatatttcggggcatgcgtgcgtttgaaccacaaacgtgtgtgaaacttataaaatggg |
112 |
Q |
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| T |
37837576 |
tcatcattcaatgtgtcacaatagagcaagataaggtttcaaatatttcggggcatgcgtgcgtttgaaccacaaacgtgtgtgaaacttataaaatggg |
37837675 |
T |
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| Q |
113 |
taagaattaaaagagatcatgtttatcctaggttcttaataggcaaagcaataaatattcattaaaggagaatagccataataaattgtggagtaaatta |
212 |
Q |
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| T |
37837676 |
taagaattaaaagagatcatgtttatcctaggttcttaataggcaaagcaataaatattcattaaaggagaatagccataataaattgtggagtgaatta |
37837775 |
T |
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| Q |
213 |
aattaccattaataaattttaaataagtgcaactgctatagtagcgtgatactttccttacagctgttgaaactttaaattacaaacctaattttcactc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37837776 |
aattaccattaataaattttaaataagtgcaactgctatagtagcgtgatactttccttacagctgttgaaactttaaattacaaacctaattttcactc |
37837875 |
T |
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| Q |
313 |
aaacatcaacatgggaccatcatcgaaagaaccttagtctacatgtccaaaagatacgacgttcatgtctcttt |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37837876 |
aaacatcaacatgggaccatcatcgaaagaaccttagtctgcatgtccaaaagatacgacgttcatgtctcttt |
37837949 |
T |
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