View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14056_low_9 (Length: 341)
Name: NF14056_low_9
Description: NF14056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14056_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 36362386 - 36362153
Alignment:
| Q |
10 |
acatcatcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaatgcatcaaacgtagtataatcaacccattccttcaacttct |
109 |
Q |
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| T |
36362386 |
acatcagcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaatgcatcaaacgtagtataatcaacccattccttcaacttct |
36362287 |
T |
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| Q |
110 |
gttccttctcccagttttcaggtatcttaacctttcccttcatctcttccctatgcctcttcaacctctcacgccccgtaatttcttctaccctagcagt |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36362286 |
gttccttctcccagttttcaggtaccttaacctttcccttcatctcttccctatgcctcttcaacctctcacgccccgtaatttcttctaccctagcagt |
36362187 |
T |
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| Q |
210 |
accattctctttattctcttcctctttggccttt |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36362186 |
accattctctttattctcttcctctttggccttt |
36362153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 36362117 - 36362069
Alignment:
| Q |
279 |
atttggagagttacactcgagcttgtaatcactttgttgaagagataat |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36362117 |
atttggagagttacactcgagcttgtaatcactttgttgaagagataat |
36362069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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