View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14057_high_1 (Length: 450)
Name: NF14057_high_1
Description: NF14057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14057_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 71 - 435
Target Start/End: Complemental strand, 1780596 - 1780231
Alignment:
| Q |
71 |
aaggaaatagtaatttatttgacacatcnnnnnnnnnnnnnttggacatatttatacataaagaacaatttaataatatttatgcattaatgatatactt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1780596 |
aaggaaatagtaatttatttgacacatcaaaaaaataaaaattggacatatttatacataaagaacaatttaataatatttatgcataaattatatactt |
1780497 |
T |
|
| Q |
171 |
gatgtaaccaataaaaaa-ttatatacttgactgatataccatctattttcttaatacatatgaatgtatcaaagatgcttacaaatagggacataatca |
269 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1780496 |
gatgtaaccaaaaaaaaaattatatacttgactgatataccatctattttcttaatacatatgaatgtatcaaagatgcttacaaatagggacataatca |
1780397 |
T |
|
| Q |
270 |
aaagtctattatagatcttttatcaagtcttccatggatatgaggtaagcacannnnnnnnnnnngttggttagcacaattctactatatataatgccat |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1780396 |
aaagtctattatagatcttttatcaagtcttccatggatatgaggtaagcacaatttttttttttgttggttagcacaattctactatatataatgccat |
1780297 |
T |
|
| Q |
370 |
tgacttttaaggatatattttcacttgcaataaataaaaccgtagattaataagatgttattcatg |
435 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1780296 |
tgacttttaaggatatatttccacttgcaataaataaaaacgtagattaataagatgttattcatg |
1780231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 186 - 322
Target Start/End: Complemental strand, 1798594 - 1798460
Alignment:
| Q |
186 |
aaattatatacttgactgatataccatctattttcttaatacatatgaatgtatcaaagatgcttacaaatagggacataatcaaaagtctattatagat |
285 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
1798594 |
aaattatatacttgattgatg--ccatctattttcttaatacatatgaaagtatcaaagatgcttacaaatagggacatgatcaaaagtctattataaat |
1798497 |
T |
|
| Q |
286 |
cttttatcaagtcttccatggatatgaggtaagcaca |
322 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1798496 |
cttttatcaagtcttccatggatgcgaggtaagcaca |
1798460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 1798640 - 1798579
Alignment:
| Q |
112 |
ttggacatatttatacataaagaacaatttaataatatttatgcattaatgatatacttgat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
1798640 |
ttggacatatttatacataaagaacaatttaataatgtttatacataaattatatacttgat |
1798579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University