View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14057_low_1 (Length: 962)

Name: NF14057_low_1
Description: NF14057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14057_low_1
NF14057_low_1
[»] chr1 (6 HSPs)
chr1 (19-950)||(5053753-5054683)
chr1 (425-564)||(46446005-46446147)
chr1 (235-564)||(46672020-46672361)
chr1 (235-325)||(46445806-46445896)
chr1 (59-194)||(46445629-46445764)
chr1 (601-630)||(46446193-46446222)
[»] chr8 (12 HSPs)
chr8 (236-565)||(9841800-9842135)
chr8 (228-576)||(9860438-9860787)
chr8 (597-724)||(9860829-9860956)
chr8 (597-724)||(9842188-9842315)
chr8 (57-194)||(9841620-9841757)
chr8 (279-325)||(9902793-9902839)
chr8 (238-321)||(9846852-9846935)
chr8 (602-724)||(9903122-9903244)
chr8 (415-504)||(27360973-27361062)
chr8 (133-194)||(9902658-9902719)
chr8 (133-191)||(9846733-9846789)
chr8 (466-565)||(9847066-9847165)
[»] chr5 (12 HSPs)
chr5 (237-558)||(39572169-39572499)
chr5 (237-334)||(39576175-39576272)
chr5 (597-725)||(39576559-39576687)
chr5 (425-565)||(225362-225502)
chr5 (361-577)||(4146454-4146673)
chr5 (425-558)||(39576372-39576505)
chr5 (404-511)||(2326337-2326444)
chr5 (407-488)||(4100463-4100544)
chr5 (239-325)||(2326523-2326609)
chr5 (237-325)||(3561698-3561786)
chr5 (364-504)||(3561513-3561653)
chr5 (602-652)||(3561339-3561389)
[»] chr3 (6 HSPs)
chr3 (231-321)||(7256648-7256738)
chr3 (597-698)||(7257009-7257110)
chr3 (238-314)||(49385960-49386036)
chr3 (425-488)||(7256845-7256908)
chr3 (133-192)||(49386082-49386141)
chr3 (254-325)||(49385853-49385925)
[»] scaffold0658 (1 HSPs)
scaffold0658 (415-504)||(2835-2924)
[»] chr6 (2 HSPs)
chr6 (237-313)||(112829-112905)
chr6 (449-491)||(112636-112678)


Alignment Details
Target: chr1 (Bit Score: 785; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 19 - 950
Target Start/End: Complemental strand, 5054683 - 5053753
Alignment:
Q  19 cttttccaattcctcagccacgtataatagttaggcatcaatgtactatagcatgtgttcctctcacttccaaattcaagcttttctttttacacgtttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  5054683 cttttccaattcctcagccacgtataatagttaggcatcaatgtactatagcacgtgttcctctcacttccaaattcaagcttttctttttacatgtttt 5054584  T
Q  119 tgcgatttctgcttctttctggtatgttttctatgtgctaagaatatgaatagataactcgtggaacgagatagctnnnnnnnn--gctcccattcaagg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||          |||||| |||||||    
T  5054583 tgcgatttctgcttctttctggtatgttttctatgtgctaagaataagaatagataactcgtggaacgagatagctagaaaaaaaagctccccttcaagg 5054484  T
Q  217 gaannnnnnncggcaaatactttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgta 316  Q
    |||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054483 gaatttttttcggcaaatactttatagtggaggcaatgatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgta 5054384  T
Q  317 cgagaatatttatttccctctataacgattctacatgttgcaagatttttatggatgggaaatcgcttttgttgtattgcgcataaagatttttatacaa 416  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5054383 cgagaatatttatttc--tctacaacgattctacatgttgcaagatttttatggatgggaaatcgcttttcttgtattgcgcataaagatttttatacaa 5054286  T
Q  417 catttcagatctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttga 516  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054285 catttcagatctatattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttga 5054186  T
Q  517 tattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatctttaaagtatctctacttggaagagacatcaaacacatacattttggttacaat 616  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054185 tactttgtatgtggtatttcgtttgtggatcaacgatcaaatcatctttaaagtatctctacttggaagagacatcaaacacatacattttggttacaat 5054086  T
Q  617 gtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagtttcatttccaagtactccga 716  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5054085 gtcaagaccaaacatttgacaaagatcgagggcattaccatgggcaattttgaggtatggcctcacgtcaacagtttagtttcatttccaagtactccga 5053986  T
Q  717 catagctagatttcctggtattacttatatttgtcttagttaggcataacaattaaacaattatttatgtttctatttaattattta-gattgatatggc 815  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5053985 catagctaggtttcctggtattacttatatttgtcttagttaggcataacaattaaacaattatttatgtttctatttaattatttacgattgatatggc 5053886  T
Q  816 caaataaaaggtgaagttttatgcataaagggtttgacttaattaatttatttatccaaatttgatttgaaaacacttggtgaatgtctgctaattattt 915  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5053885 caaataaaaggtgaagttttatgcttaaagggtttgacttaattaatttatttatccaaatttgatttggaaacacttggtgaatgtctgctaattattt 5053786  T
Q  916 atacaaattttgtctcttgaccccttaatgatgat 950  Q
    |||||  |||||  |||||||||||||||||||||    
T  5053785 atacagtttttg--tcttgaccccttaatgatgat 5053753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 425 - 564
Target Start/End: Original strand, 46446005 - 46446147
Alignment:
Q  425 atctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgt 524  Q
    ||||||||||||||||||||| ||||  ||||||||| ||||||||||||||||| |||||||||||| ||||| || |||||||||||| ||| |||||    
T  46446005 atctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgagcttaataatttgt 46446104  T
Q  525 at---gtggtatttcgtttgtggatcaacgatcaaatcatctt 564  Q
     |   |||||||||||||| ||| |||||||||||||||||||    
T  46446105 cttcggtggtatttcgtttttgggtcaacgatcaaatcatctt 46446147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 235 - 564
Target Start/End: Complemental strand, 46672361 - 46672020
Alignment:
Q  235 actttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatatttatttccc 334  Q
    |||||||||||||||||| |||||||| || |||||||||||| |||| ||||||||||||||||| |  |||||||||||| ||||||||  | |||||    
T  46672361 actttatagtggaggcaatgatctttactgaataacaaatgatgaagtaattgtgatggatgttgatagagaaattattgtatgagaatatccacttccc 46672262  T
Q  335 tctataacgattctacatgttg--------caagattttt-atggatgggaaatcgcttttgttgtattgcgcataaagatt---tttatacaacatttc 422  Q
     ||||   ||| |   ||||||        | |||||||| || ||||||||||| | ||| ||| |||| | | ||||||    || ||  | ||| ||    
T  46672261 actatgctgatgc---atgttggtaaagttccagattttttattgatgggaaatcacctttcttgcattgtgtacaaagataaaattaatgaagcatatc 46672165  T
Q  423 agatctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgc---ttgcggtcatgagcttgatat 519  Q
    | ||||||||||||||||||||| | |||||||||||||  ||||||| |||||||| |||||||||||| |||||   ||| |||||| ||||||| ||    
T  46672164 aaatctacattttggattttgattcaggaaaatggtctctctatcatgcgatgggacattttgattatgtggctgcttgttgtggtcataagcttgaaat 46672065  T
Q  520 tttgtatgtggtatttcgtttgtggatcaacgatcaaatcatctt 564  Q
    ||| |   |||||||| | ||||||||||||||| |||| |||||    
T  46672064 tttttcgttggtattttgcttgtggatcaacgattaaattatctt 46672020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 46445806 - 46445896
Alignment:
Q  235 actttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatat 325  Q
    |||||||||||||||||| |||||||| |||||||||| |||| |  | ||||| ||||||||||| |  ||||||||||||  |||||||    
T  46445806 actttatagtggaggcaatgatctttactggataacaattgatgatataattgtaatggatgttgatagagaaattattgtagaagaatat 46445896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 46445629 - 46445764
Alignment:
Q  59 atgtactatagcatgtgttcctctcacttccaaattcaagcttttctttttacacgtttttgcgatttctgcttctttctggtatgttttctatgtgcta 158  Q
    ||||||||||||| ||||||| | |||| | ||||||||| | ||| ||||  | ||  ||| |||||| | |  ||| |||||||||||||||||| ||    
T  46445629 atgtactatagcacgtgttccccacactgcaaaattcaagttgttccttttggatgtccttgagatttcgggtaatttttggtatgttttctatgtgtta 46445728  T
Q  159 agaatatgaatagataactcgtggaacgagatagct 194  Q
    |||||  |||||||||| || ||||| |||||||||    
T  46445729 agaattggaatagataattcatggaaagagatagct 46445764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 630
Target Start/End: Original strand, 46446193 - 46446222
Alignment:
Q  601 acattttggttacaatgtcaagaccaaaca 630  Q
    ||||||||||||||||||||||||||||||    
T  46446193 acattttggttacaatgtcaagaccaaaca 46446222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 236 - 565
Target Start/End: Original strand, 9841800 - 9842135
Alignment:
Q  236 ctttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatatttatttccct 335  Q
    ||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||  | ||||||    
T  9841800 ctttatagtggaggcaatgatctttactggataacatatgacaaagtgattgtgatggatgttgacaaggaaactattgtacgagaatatccacttccct 9841899  T
Q  336 ctataacgattctacatg------ttgcaagatttttatggatgggaaatcgcttttgttgtattgcgcataaagatttttatacaacatttcagatcta 429  Q
    ||| ||  || |    ||      |||| | | |||||||||||||||||||| ||| ||| ||||||  |||||||  |||||  |||| ||| |||||    
T  9841900 ctagaaatatgcgttttggtccgcttgcgatacttttatggatgggaaatcgcctttcttgcattgcgactaaagatacttatagtacatatcaaatcta 9841999  T
Q  430 cattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtg 529  Q
    |||| ||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||  ||||||| ||||||  |||| ||| |  | |||||    
T  9842000 cattctggattttgattcaggaaaatggtctcttcatcatgagatgggaccttttgattatgtgtctgcttgtggtcataggcttaatactacggatgtg 9842099  T
Q  530 gtatttcgtttgtggatcaacgatcaaatcatcttt 565  Q
       |||||||||||||||||||||||||| ||||||    
T  9842100 aagtttcgtttgtggatcaacgatcaaattatcttt 9842135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 228 - 576
Target Start/End: Original strand, 9860438 - 9860787
Alignment:
Q  228 ggcaaatactttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatattt 327  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||  |  |||||||||| ||||||||||||| | |||||||| ||||||||||| |    
T  9860438 ggcaaacactttatagtggaggcaatgatatttattggataacaaaaaaggaagtgattgtcatggatgttgacaggcaaattattatacgagaatatct 9860537  T
Q  328 atttccctctataacgattctacatgttgcaagatttttatggatgggaaatcgcttttgttgtattgcgcataaagatttttatacaacatttcaga-t 426  Q
      |||||  | |  |||     |   || ||| || || ||||||||||||  || ||| ||| |||||   |||||| || |||| ||||| ||| | |    
T  9860538 gcttccccatgtgccgaacagtctaattccaaaatattcatggatgggaaactgcctttcttgcattgcctctaaagaattctatagaacatatcaaaat 9860637  T
Q  427 ctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtat 526  Q
     | ||||||||||  |||| | ||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||||| |||||| | ||||||| |    
T  9860638 attcattttggatcatgattcaggaaaatggtctctttatcatgagatgggaccttttgattatgtgtctgcttgtggtcaagagcttcagattttgttt 9860737  T
Q  527 gtggtatttcgtttgtggatcaacgatcaaatcatctttaaagtatctct 576  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||| ||||    
T  9860738 gtggcatttcgtttgtggatcaaccatcaaattatctttaaagtagctct 9860787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 597 - 724
Target Start/End: Original strand, 9860829 - 9860956
Alignment:
Q  597 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 696  Q
    |||| |||||||||||||||||||| || | ||| ||||||| ||| |||||||||    ||||  |||||||||||||| ||||| |||||||||||||    
T  9860829 acattcattttggttacaatgtcaaaactagacaattgacaatgatcgagggcattgatgtgggtgattttgaggtatggtctcacattaacagtttagt 9860928  T
Q  697 ttcatttccaagtactccgacatagcta 724  Q
    |||||| ||| |||||||  ||||||||    
T  9860929 ttcattgccatgtactccagcatagcta 9860956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 597 - 724
Target Start/End: Original strand, 9842188 - 9842315
Alignment:
Q  597 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 696  Q
    |||||||||||||||||||||| |||||||  || |||||||||||||||| ||||  | | ||||| ||||| ||||| | ||||  ||||||| ||||    
T  9842188 acatacattttggttacaatgtgaagaccaggcaattgacaaagattgaggacattgacgttggcaactttgaagtatgtcttcacactaacagtctagt 9842287  T
Q  697 ttcatttccaagtactccgacatagcta 724  Q
    |||||| ||| |||||||  ||||||||    
T  9842288 ttcattgccaggtactcctgcatagcta 9842315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 9841620 - 9841757
Alignment:
Q  57 caatgtactatagcatgtgttcctctcacttccaaattcaagcttttctttttacacgtttttgcgatttctgcttctttctggtatgttttctatgtgc 156  Q
    |||| |||||||||| ||||||||| |||||||||||||||||||||| || || | ||  ||| | |||| | | |||  |||||||||||||||||||    
T  9841620 caatatactatagcacgtgttcctcgcacttccaaattcaagcttttccttatagatgtccttgaggtttcgggtgcttgttggtatgttttctatgtgc 9841719  T
Q  157 taagaatatgaatagataactcgtggaacgagatagct 194  Q
    | |||||  ||||||||||  | ||||| |||||||||    
T  9841720 tgagaatcggaatagataatgcatggaaagagatagct 9841757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 9902793 - 9902839
Alignment:
Q  279 aagtgattgtgatggatgttgacaaggaaattattgtacgagaatat 325  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  9902793 aagtgattgtgatggatgttgacaaggaaattattctacgagaatat 9902839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 9846852 - 9846935
Alignment:
Q  238 ttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgaga 321  Q
    ||||||||||||||| ||||||||||||||  ||| | |  ||||||||||| | ||||||||||||||||||| | |||||||    
T  9846852 ttatagtggaggcaatgatctttattggatgtcaattaaggaagtgattgtgttcgatgttgacaaggaaattactttacgaga 9846935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 724
Target Start/End: Original strand, 9903122 - 9903244
Alignment:
Q  602 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagtttcat 701  Q
    |||||| |||||||||| ||||||||||| |||| ||||||||||| ||||  | ||||  ||||| | ||||||  ||||  ||||||| |||||||||    
T  9903122 catttttgttacaatgtgaagaccaaacaattgataaagattgaggacattgacgtgggagattttaaagtatggtttcacactaacagtctagtttcat 9903221  T
Q  702 ttccaagtactccgacatagcta 724  Q
    |  ||||||||||  ||||||||    
T  9903222 tgtcaagtactccaccatagcta 9903244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 27360973 - 27361062
Alignment:
Q  415 aacatttcagatctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcgg 504  Q
    ||||| ||| ||||| | |||||||||||||   |||||||||  || ||||||||||||||||||||||||||| |  |||||||||||    
T  27360973 aacatatcaaatctatactttggattttgatttaggaaaatggaatctttatcatgagatgggaccttttgattacgaggctgcttgcgg 27361062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 9902658 - 9902719
Alignment:
Q  133 ctttctggtatgttttctatgtgctaagaatatgaatagataactcgtggaacgagatagct 194  Q
    |||| ||||||||||||||| ||||||||||  ||||||||||||| ||||  |||||||||    
T  9902658 ctttttggtatgttttctatatgctaagaatcggaatagataactcatggagagagatagct 9902719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 9846733 - 9846789
Alignment:
Q  133 ctttctggtatgttttctatgtgctaagaatatgaatagataactcgtggaacgagata 191  Q
    ||||||||||||||||||  |||||||||||  ||||||||||||| ||||| ||||||    
T  9846733 ctttctggtatgttttct--gtgctaagaattggaatagataactcatggaaagagata 9846789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 9847066 - 9847165
Alignment:
Q  466 tcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatcttt 565  Q
    ||||||||||| |||||||| || | | | |||||| |||| ||   |||||||| ||  ||||||||||||||| |||||||| |||||||| ||||||    
T  9847066 tcatgagatggaaccttttgtttgtatgggtgcttgtggtcctggtattgatattatgagtgtggtatttcgtttttggatcaatgatcaaattatcttt 9847165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 9e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 237 - 558
Target Start/End: Original strand, 39572169 - 39572499
Alignment:
Q  237 tttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatatttatttccctc 336  Q
    ||||||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||  |    
T  39572169 tttatagtggaggtaatgatctttattggataacaaatgaggaagtgattgtgatggatgttgataaggaaattattgtacgagaatatccatttccacc 39572268  T
Q  337 tataacgat---------tctacatgttgcaagatttttatggatgggaaatcgcttttgttgtattgcgcataaagat---ttttatacaacatttcag 424  Q
    | |   |||         || || |||   ||| ||||||||||||| ||||||||||| ||| |||| | ||||||||   ||| | | || || ||      
T  39572269 tgtgttgatgcgtggtcgtccacctgtg--aag-tttttatggatggaaaatcgcttttcttgcattgtgtataaagatcattttcaaaaaagatatcca 39572365  T
Q  425 atctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgt 524  Q
    ||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||| ||     
T  39572366 atctacattttggattttgattcaagaaaatggtctccttatcatgagatgggaccttttgattatgttgctgcttgtggtaaccagcttgatattatga 39572465  T
Q  525 atgtggtatttcgtttgtggatcaacgatcaaat 558  Q
     || | ||||| || | |||||||||||||||||    
T  39572466 ttgagatattttgtctatggatcaacgatcaaat 39572499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 39576175 - 39576272
Alignment:
Q  237 tttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatatttatttccc 334  Q
    |||||||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  39576175 tttatagtggaggcaatgatctttactggataacaaatgaggaagtgattgtgatggatgttgataaggaaattattgtacgagaatattcatttccc 39576272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 597 - 725
Target Start/End: Original strand, 39576559 - 39576687
Alignment:
Q  597 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 696  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||  |||  ||||||| ||||||| ||||  ||||||| |  |    
T  39576559 acatacattttagttacaatgtcaagaccaaacaattgacaaagattgagggcattgcctcgggtgattttgaagtatggcttcacactaacagtctttt 39576658  T
Q  697 ttcatttccaagtactccgacatagctag 725  Q
    |||||||||||||||||||||||||||||    
T  39576659 ttcatttccaagtactccgacatagctag 39576687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 425 - 565
Target Start/End: Original strand, 225362 - 225502
Alignment:
Q  425 atctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgt 524  Q
    |||||||| || ||||||||| |  |||||||||||| ||||||||||||  ||||||||| |||||| |||| |||||||| || ||||  |||||| |    
T  225362 atctacatgttagattttgatgcaagaaaatggtctctttatcatgagatctgaccttttggttatgtggctgtttgcggtcgtgggcttagtatttttt 225461  T
Q  525 atgtggtatttcgtttgtggatcaacgatcaaatcatcttt 565  Q
     ||||| ||||||||||||||||||||||||||||||||||    
T  225462 gtgtggcatttcgtttgtggatcaacgatcaaatcatcttt 225502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 361 - 577
Target Start/End: Original strand, 4146454 - 4146673
Alignment:
Q  361 atttttatggatgggaaatcgcttttgttgtattgcgcataaagat---ttttatacaacatttcagatctacattttggattttgatacgggaaaatgg 457  Q
    ||||||| |||||||||||| | ||| ||| |||| | |||| |||   |||| || ||||||||| |||||  |||||||||||||    |||||||||    
T  4146454 atttttagggatgggaaatcacctttcttgcattgtgaataatgatgcattttgtagaacatttcaaatctatgttttggattttgagttaggaaaatgg 4146553  T
Q  458 tctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaa 557  Q
    |||| |||||||||||||||||||||||||| |    |||||||||| |||||| || ||||| ||| |||||| ||| |||| ||||||||| ||||||    
T  4146554 tctctttatcatgagatgggaccttttgattttccgactgcttgcggccatgagattcatattctgtgtgtggtgttttgtttctggatcaaccatcaaa 4146653  T
Q  558 tcatctttaaagtatctcta 577  Q
    | ||| ||  ||||||||||    
T  4146654 ttatccttcgagtatctcta 4146673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 425 - 558
Target Start/End: Original strand, 39576372 - 39576505
Alignment:
Q  425 atctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgt 524  Q
    ||||||| ||||||||||||| | ||| ||||||||| |||||||||||||||||||||  |||||||||||||| | ||| |  ||||| ||||| ||     
T  39576372 atctacactttggattttgattcaggagaatggtctctttatcatgagatgggacctttcaattatgttgctgctagtggtaaccagcttaatattatga 39576471  T
Q  525 atgtggtatttcgtttgtggatcaacgatcaaat 558  Q
     || | ||||||||||||||||||||||||||||    
T  39576472 gtgcgatatttcgtttgtggatcaacgatcaaat 39576505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 404 - 511
Target Start/End: Complemental strand, 2326444 - 2326337
Alignment:
Q  404 gatttttatacaacatttcagatctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcg 503  Q
    |||||| ||| ||||||||| |||||||||||| |||||||| | ||||||| ||||| |||||||||||||||||| ||||||||||| ||| |||| |    
T  2326444 gattttaatagaacatttcaaatctacattttgaattttgattcaggaaaattgtctctttatcatgagatgggaccatttgattatgtggctacttgtg 2326345  T
Q  504 gtcatgag 511  Q
    ||||||||    
T  2326344 gtcatgag 2326337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 4100544 - 4100463
Alignment:
Q  407 ttttatacaacatttcagatctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgatt 488  Q
    ||||||| ||||||||| ||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||    
T  4100544 ttttatagaacatttcaaatctacattttggattttgagttaggaaaatggtctctttatcatgagatgggaccttttgatt 4100463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 2326609 - 2326523
Alignment:
Q  239 tatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatat 325  Q
    |||||||||| ||| |||||||| ||||||||| |  |  |||||||||||||| |||||||||||||||||||| | |||||||||    
T  2326609 tatagtggagacaatgatctttactggataacagaaaaggaagtgattgtgatgaatgttgacaaggaaattattatgcgagaatat 2326523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 3561786 - 3561698
Alignment:
Q  237 tttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatat 325  Q
    |||||||||| ||||| |||||||| ||||||  ||| ||   |||||||||||||||||||||||||||| |||||||  ||||||||    
T  3561786 tttatagtggtggcaatgatctttactggatactaaaggaatcagtgattgtgatggatgttgacaaggaagttattgtcagagaatat 3561698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 364 - 504
Target Start/End: Complemental strand, 3561653 - 3561513
Alignment:
Q  364 tttatggatgggaaatcgcttttgttgtattgcgcataaagatttttatacaacatttcagatctacattttggattttgatacgggaaaatggtctcat 463  Q
    ||||||||||||||||| | ||| ||| |||| |||| |||||     || ||||||||| || |||||||||||| |  || | ||||||||||| | |    
T  3561653 tttatggatgggaaatcacctttcttgcattgtgcatgaagatcccattaaaacatttcaaatttacattttggatatcaattcaggaaaatggtcactt 3561554  T
Q  464 tatcatgagatgggaccttttgattatgttgctgcttgcgg 504  Q
    ||||| ||||||| ||  ||||||||||| | |||||||||    
T  3561553 tatcacgagatggtactctttgattatgtggttgcttgcgg 3561513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 652
Target Start/End: Complemental strand, 3561389 - 3561339
Alignment:
Q  602 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcatt 652  Q
    ||||||||||||||||||||||| | ||  ||||||||||| |||||||||    
T  3561389 cattttggttacaatgtcaagactagacgattgacaaagatagagggcatt 3561339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 7256648 - 7256738
Alignment:
Q  231 aaatactttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattgtacgaga 321  Q
    |||||||||||| ||||||||| |||||||| || |||||||  ||| ||||||||||||| |||||||| ||||||| |||||| |||||    
T  7256648 aaatactttataatggaggcaatgatctttactgaataacaatggatgaagtgattgtgatagatgttgaaaaggaaactattgttcgaga 7256738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 597 - 698
Target Start/End: Original strand, 7257009 - 7257110
Alignment:
Q  597 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 696  Q
    ||||| |||||||||| ||||| |||||||  || ||||| |||||||||| ||||   |||||||||||||| |||||| |||||  ||||||| ||||    
T  7257009 acatatattttggttataatgtgaagaccaggcaattgactaagattgaggacattggaatgggcaattttgaagtatggtctcacactaacagtctagt 7257108  T
Q  697 tt 698  Q
    ||    
T  7257109 tt 7257110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 49386036 - 49385960
Alignment:
Q  238 ttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattattg 314  Q
    |||||||||||| || |||||||| ||||||||||  ||  |||||||||||||| ||||||  |||||||||||||    
T  49386036 ttatagtggaggaaatgatctttactggataacaagagaggaagtgattgtgatgaatgttgttaaggaaattattg 49385960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 425 - 488
Target Start/End: Original strand, 7256845 - 7256908
Alignment:
Q  425 atctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgatt 488  Q
    ||||||||||| ||||||||| |  |||||||||||| |||||||  |||||||||||||||||    
T  7256845 atctacattttagattttgattcaagaaaatggtctctttatcatatgatgggaccttttgatt 7256908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 49386141 - 49386082
Alignment:
Q  133 ctttctggtatgttttctatgtgctaagaatatgaatagataactcgtggaacgagatag 192  Q
    ||||||| |||||||||||||||||||||||  ||||| ||||||| ||||| |||||||    
T  49386141 ctttctgatatgttttctatgtgctaagaattggaatacataactcatggaaagagatag 49386082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 49385853 - 49385925
Alignment:
Q  254 gatctttattggataacaaat-gataaagtgattgtgatggatgttgacaaggaaattattgtacgagaatat 325  Q
    |||||||| | |||||||||  || ||||||||||||||| || |||| |||||||||||||||| |||||||    
T  49385853 gatctttactagataacaaagagaaaaagtgattgtgatgaatattgataaggaaattattgtacaagaatat 49385925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 2924 - 2835
Alignment:
Q  415 aacatttcagatctacattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcgg 504  Q
    ||||| ||| ||||| | |||||||||||||   |||||||||  || ||||||||||||||||||||||||||| |  |||||||||||    
T  2924 aacatatcaaatctatactttggattttgatttaggaaaatggaatctttatcatgagatgggaccttttgattacgaggctgcttgcgg 2835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 112905 - 112829
Alignment:
Q  237 tttatagtggaggcaaggatctttattggataacaaatgataaagtgattgtgatggatgttgacaaggaaattatt 313  Q
    |||||| |||||  || ||| |||||||||||||||  |||  ||||| ||||||||||||||||| ||||||||||    
T  112905 tttataatggagaaaatgatatttattggataacaagggatggagtgactgtgatggatgttgacagggaaattatt 112829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 449 - 491
Target Start/End: Complemental strand, 112678 - 112636
Alignment:
Q  449 ggaaaatggtctcattatcatgagatgggaccttttgattatg 491  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||    
T  112678 ggaaaatggactctttatcatgagatggggccttttgattatg 112636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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