View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14057_low_2 (Length: 561)
Name: NF14057_low_2
Description: NF14057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14057_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 13446109 - 13445828
Alignment:
| Q |
1 |
gcaaaatgactccacaatgagctagagtacatctattttgaatcatgttattcgaaacctttgaaggcaccaaccttttccaaatacgatgagacatcta |
100 |
Q |
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| T |
13446109 |
gcaaaatgactccacgatgagctagagcacatctattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgaaacatcca |
13446010 |
T |
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| Q |
101 |
tatctctagactacacatattgacttcaggtcggtatattcttgagatcaaagcataagatgagatgacagtgaaaacaccattctccgaatcccataac |
200 |
Q |
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| T |
13446009 |
tatctctagactacccatattgacttcaggtcagtatattcttgagatcaaagcataagatgagatgacagtgaaaacactattctccgaatcccataac |
13445910 |
T |
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| Q |
201 |
catttatattcctttgaggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttg |
282 |
Q |
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| T |
13445909 |
catttatattcctttgaggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttg |
13445828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 342 - 545
Target Start/End: Complemental strand, 13445768 - 13445566
Alignment:
| Q |
342 |
ttgccagtttggatatgtttggttggcagcttcaaaagcatgcttggatccgaattaattaacttacacaaccgaaacaaaactagttgagccctccaaa |
441 |
Q |
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| T |
13445768 |
ttgccagtttggatatgtttggttggcagcttcaaaagcatgcttggatccgaattaattaacttacactgccgaaacaaa-ctagttgagccctccaaa |
13445670 |
T |
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| Q |
442 |
acatctattagttcaatatatattgatgcatttggaaatcaaaatttaaaatgggcaagggttgagagattgagaaaagggatggagtgcagtgatgcat |
541 |
Q |
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| T |
13445669 |
acttctagtagttcaatatatattgatgcatttggaaatcaaaacttaaaatggacaagggttgagagattgagaaaagggatggagtgcagtgatgcat |
13445570 |
T |
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| Q |
542 |
ttag |
545 |
Q |
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|||| |
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| T |
13445569 |
ttag |
13445566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 31959396 - 31959344
Alignment:
| Q |
218 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgt |
270 |
Q |
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| T |
31959396 |
ggcaaattgaaggatgtagctgtatgatttcccagtagctattgcatatctgt |
31959344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 31966386 - 31966334
Alignment:
| Q |
218 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgt |
270 |
Q |
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| T |
31966386 |
ggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgt |
31966334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 20973525 - 20973553
Alignment:
| Q |
220 |
caaattgaagtatgtagctgtatgatttc |
248 |
Q |
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| T |
20973525 |
caaattgaagtatgtagctgtatgatttc |
20973553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 494
Target Start/End: Complemental strand, 34226859 - 34226826
Alignment:
| Q |
461 |
atattgatgcatttggaaatcaaaatttaaaatg |
494 |
Q |
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| T |
34226859 |
atattgatgcatttggaaatcaaaacttaaaatg |
34226826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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