View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14057_low_4 (Length: 288)
Name: NF14057_low_4
Description: NF14057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14057_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 4720169 - 4719910
Alignment:
| Q |
12 |
atgaaatactgaaacatcagcaagcgtaaacacaaaatacttgactt-atagtagagagataataaacaccagagcttggacaaccaatgaatgtgaaga |
110 |
Q |
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| T |
4720169 |
atgaaatactgaaacagcagcaagcgtaaacacaaaatacttgactttatagtagagagataataaacaccagagcatggacaaccaatgaatgtgaaga |
4720070 |
T |
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| Q |
111 |
aatgtgacaatcagcatggagtataaaagaacgtgtcattgtctctttctccctttcttattttacgtcatcaacgttggttccatgaaatgcatatact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4720069 |
aatgtgacaatcagcatggagtataaaagaacgtgtcattgtctctttctccatttcttattttacatcatcaacgttggttccatgaaatgcatatact |
4719970 |
T |
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| Q |
211 |
ctgattgaaatttggtcacgacattgatgtttagaaattattgatgggtagaatctgact |
270 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
4719969 |
ctgattgaaacttggtcacgaaattgatgtttagaaattattgatgggtggaatctgact |
4719910 |
T |
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