View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14058_high_13 (Length: 318)

Name: NF14058_high_13
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14058_high_13
NF14058_high_13
[»] chr4 (1 HSPs)
chr4 (14-304)||(16930092-16930382)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 16930382 - 16930092
Alignment:
Q  14 gaattggatcaatgtcttaatcataagaattaaaatcatgaacttctaatttnnnnnnncgtcgttagtttcaaatgatttttaagaattggtactccac 113  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  16930382 gaattggatcgatgtcttaatcataagaattaaaatcacgaacttctaatttaaaaaaccgtcgttagtttcaaatgatttttaagaattggtactccac 16930283  T
Q  114 atgaactacttatcaagatggtaaaacccactaccgtaaatatttttgaatcaatcattttaaacatttattttttgctaaatcattacgtttataaatt 213  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  16930282 gtgaactacttatcaagatggtaaaacccactaccgtaaatatttttgaatcaatcattttaaacatttattttttgctaaatcattacgttaacaaatt 16930183  T
Q  214 caaattctaaactaattatttacatgaaaaggggtggccgttggatgtggatggcaaacatttgttgcatatgtaaacgttggttgttatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16930182 caaattctaaactaattatttacatgaaaaggggtggccgttggatgtggatggcaaacatttgttgcatatgtaaacgttggttgttatt 16930092  T

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