View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_high_14 (Length: 302)
Name: NF14058_high_14
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 67 - 287
Target Start/End: Original strand, 18929144 - 18929364
Alignment:
| Q |
67 |
taattaactaagaatagtttgagtatccaacaattactttatcatcaatcatataatgagcatatattcaaacagattgttcaaacacacaaaatccatt |
166 |
Q |
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| T |
18929144 |
taattaactaagaatagtttgagtatccaacaattactttatcatcaatcatataatgagcatatattcagacagattgttcaaacacacaaaatccatt |
18929243 |
T |
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| Q |
167 |
gtttgcgacactgactcctccatctatgacaagattaagaccactaacatacttagactcatcacttcccaaatacaaagcagcttcagccacatctttt |
266 |
Q |
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| T |
18929244 |
gtttgcgacactgactcctccatctatgacaagattaagaccactaacatacttagactcatcacttcccaaatacaaagcagcttcagccacatctttt |
18929343 |
T |
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| Q |
267 |
ggcacaagattagtccccttt |
287 |
Q |
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| T |
18929344 |
ggcacaagattagtacccttt |
18929364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 18933886 - 18934027
Alignment:
| Q |
138 |
acagattgttcaaacacacaaaatccattgtttgcgacactgactcctccatctatgacaagattaagaccactaacatacttagactcatcacttccca |
237 |
Q |
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| T |
18933886 |
acagattctccaaacacacaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttccca |
18933985 |
T |
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| Q |
238 |
aatacaaagcagcttcagccacatcttttggcacaagattag |
279 |
Q |
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| T |
18933986 |
agtatagagcagcttcagccacatcttttggcacaagattag |
18934027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 287
Target Start/End: Original strand, 18938573 - 18938722
Alignment:
| Q |
138 |
acagattgttcaaacacacaaaatccattgtttgcgacactgactcctccatctatgacaagattaagaccactaacatacttagactcatcacttccca |
237 |
Q |
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| T |
18938573 |
acagattgtccaaacacagaaaatccattgttagagacactgactgctccatctacgacaagattgtgaccactaacatacttagattcgtcactgccca |
18938672 |
T |
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| Q |
238 |
aatacaaagcagcttcagccacatcttttggcacaagattagtccccttt |
287 |
Q |
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| || | || |||||||||||||||||| |||||||||||||| |||||| |
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| T |
18938673 |
agtaaagagaagcttcagccacatctttaggcacaagattagtacccttt |
18938722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 18946068 - 18946215
Alignment:
| Q |
132 |
attcaaacagattgttcaaacacacaaaatccattgtttgcgacactgactcctccatctatgacaagattaagaccactaacatacttagactcatcac |
231 |
Q |
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| T |
18946068 |
attcagacagattgtttaaagatacaaaatccattatttccgaccgtaagtccaccatctacaactagattgtgaccactaacatatttagactcatcac |
18946167 |
T |
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| Q |
232 |
ttcccaaatacaaagcagcttcagccacatcttttggcacaagattag |
279 |
Q |
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| T |
18946168 |
ttcccaaatacaaagcagcttcagccacatcttttggcaaaagattag |
18946215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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