View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_high_20 (Length: 240)
Name: NF14058_high_20
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 42183039 - 42183241
Alignment:
| Q |
19 |
ctgctctaggtgctaatgctatcattgataatggcggtgtatccttaaattttcaaccttttcacaacatttctgcctccaacacaaccctcaaaggtta |
118 |
Q |
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| T |
42183039 |
ctgctctaggtgctaatgctatcattgataatggtggtgtatccttaaattttcaaccttttcacaacatttctgcctccaacacaaccctcaaaggtta |
42183138 |
T |
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| Q |
119 |
atttgtgtttatttcttattgttttccatcaatcaataatatatagaaaaataagtagtgatcagaacnnnnnnngttctgtacaagtttctgaagtctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
42183139 |
atttgtgtttatttcttattgttttccatcaatcaataatatatagaaacataagtagtggtcagaacaaaaaaagttctgtacaagtttctgaagtctg |
42183238 |
T |
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| Q |
219 |
aac |
221 |
Q |
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||| |
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| T |
42183239 |
aac |
42183241 |
T |
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