View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14058_high_21 (Length: 238)
Name: NF14058_high_21
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 4259985 - 4260194
Alignment:
| Q |
17 |
agtttgtgacactttagtgctcccaaatagtgaaagcacaagcattccttgtatgctagctgaaataatcaacattctgctggtgtgaaagctagtgcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4259985 |
agtttgtgacactttagtgctcccaaatagtgaaagcacaagcattccttgtatgctagctgaaataatcaacattctgctggtgtgaaagctagtgcaa |
4260084 |
T |
|
| Q |
117 |
ggaccaatagtgaagcagattctatggcccttgtaccgagttcctttggctcaatagcatttaggaatgacgaaagtttagaagaactagaaaatgcttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4260085 |
ggaccaatagtgaagcagattctatggcctttgtaccgagttcctttggctcaataacatttaggaataacgaaagtttagaagaactagaaaatgcttt |
4260184 |
T |
|
| Q |
217 |
attagagaat |
226 |
Q |
| |
|
|||||||||| |
|
|
| T |
4260185 |
attagagaat |
4260194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 4263607 - 4263816
Alignment:
| Q |
17 |
agtttgtgacactttagtgctcccaaatagtgaaagcacaagcattccttgtatgctagctgaaataatcaacattctgctggtgtgaaagctagtgcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4263607 |
agtttgtgacactttagtgctcccaaatagtgaaagcacaagcattccttgtatgctagctgaaataatcaacattctgctggtgtgaaagctagtgcaa |
4263706 |
T |
|
| Q |
117 |
ggaccaatagtgaagcagattctatggcccttgtaccgagttcctttggctcaatagcatttaggaatgacgaaagtttagaagaactagaaaatgcttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4263707 |
ggaccaatagtgaagcagattctatggcctttgtaccgagttcctttggctcaataacatttaggaataacgaaagtttagaagaactagaaaatgcttt |
4263806 |
T |
|
| Q |
217 |
attagagaat |
226 |
Q |
| |
|
|||||||||| |
|
|
| T |
4263807 |
attagagaat |
4263816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 24670750 - 24670779
Alignment:
| Q |
24 |
gacactttagtgctcccaaatagtgaaagc |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24670750 |
gacactttagtgctcccaaatagtgaaagc |
24670779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University