View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_high_3 (Length: 561)
Name: NF14058_high_3
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 39802634 - 39803171
Alignment:
| Q |
8 |
agcaaaggccaacaagtaaacaaaacaacaaaaactgaaccagacagttcatacttttgtagtattcatattttgttccctctatgaacgtgcttatttt |
107 |
Q |
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| T |
39802634 |
agcaaaagccaacaagtaaacaaaacaacaaaaactgaaccagacagttcatacttttgtagtattcacattttgttccctctatgaacgtgcttatttt |
39802733 |
T |
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| Q |
108 |
ctttttcatattttacaggtgcacacactcttggattctctcactgtgacagattctccaatagaattcaaactccagtggaccccacattgaacaaaca |
207 |
Q |
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| T |
39802734 |
ctttttcatattttacaggtgcacacactcttggattctctcactgtgacagattctccaatagaattcaaactccagtggaccccacattgaacaaaca |
39802833 |
T |
|
| Q |
208 |
atatgctgcccagttacaacaaatgtgccctaggaatgttgatccaagaatagccatcaacatggacccaacaactcctagaacatttgacaatgtttac |
307 |
Q |
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| T |
39802834 |
atatgctgcccagttacaacaaatgtgccctaggaatgttgatccaagaatagccatcaacatggacccaacaactcctagaacatttgacaatgtttac |
39802933 |
T |
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| Q |
308 |
tacaaaaatcttcaacaaggaaaaggtttatttacttctgatcaaatcctcttcactgacacaagatcaaggaacactgttaactctttcgcgactaacg |
407 |
Q |
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| T |
39802934 |
tacaaaaatcttcaacaaggaaaaggtttatttacttctgatcaaatcctcttcactgatacaagatcaaggaacactgttaactctttcgcgactaacg |
39803033 |
T |
|
| Q |
408 |
gtaacgttttcaatgccaatttcatcactgccatgaccaagttgggtcgtgttggagttaaaaatgcgagaaatgggaaaattcgtaccgattgttctgt |
507 |
Q |
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| T |
39803034 |
gtaacgttttcaatgccaatttcatcactgccatgaccaagttgggtcgtgttggagttaaaaatgcgagaaatgggaaaattcgtaccgattgttctgt |
39803133 |
T |
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| Q |
508 |
gctttaatcaagtgtattatgtaagctggggaagtcac |
545 |
Q |
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| T |
39803134 |
gctttaatcaagtgtataatgtaagctggggaagtcac |
39803171 |
T |
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