View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_high_7 (Length: 394)
Name: NF14058_high_7
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 42 - 375
Target Start/End: Complemental strand, 38423735 - 38423402
Alignment:
| Q |
42 |
ggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagttaaagaaaataaaagttgaagttttacattgnnnnnnnct |
141 |
Q |
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| T |
38423735 |
ggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagttaaagaaaataaaagttaaagttttacattgaaaaaaact |
38423636 |
T |
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| Q |
142 |
g--ttttctttttgtcaaataacctattagttaaaaattcatctttttaaagatgaattctagcttcttttgtgaaccgtacgcatcttgatcaatacac |
239 |
Q |
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| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
38423635 |
gttttttttttttgtcaaataatctattagttaaaaattcatctttttaaagatgaattctagcttcttttgtgaaccata--catcttgatcaatacac |
38423538 |
T |
|
| Q |
240 |
aacacttattagcannnnnnngaatttatagaaaactagaacgaaggggtcttacttaccagacacgagtagatactgaaatccatccagttggcacata |
339 |
Q |
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|||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423537 |
aacaattattagcatttttttgaatttatagaaaactagaaggaaggggtcttacttaccagacacgagtagatactgaaatccatccagttggcacata |
38423438 |
T |
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| Q |
340 |
ctactaaatttcccatttcataagacgcgtatactc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38423437 |
ctactaaatttcccatttcataagacgcgtatactc |
38423402 |
T |
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