View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_1 (Length: 664)
Name: NF14058_low_1
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 42301088 - 42301251
Alignment:
| Q |
18 |
atcaaatatgaaaacactggataagccattaaaagaaaggattatgttat---tactgaggtaatctgatttatatgtcaaatttgaattcagcatagca |
114 |
Q |
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| T |
42301088 |
atcaaatatgaaaacaccggataagccattaaaagaaaagattatgttattattactgaggtaatctgatttatatgtcaaatttgaattcaacatagca |
42301187 |
T |
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| Q |
115 |
aactcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaacta |
178 |
Q |
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| T |
42301188 |
aactcaaggtcttcgcttaacaacaaggttcctccttcaaccaaatttatcaacaaaacaacta |
42301251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 42295269 - 42295437
Alignment:
| Q |
18 |
atcaaatatgaaaacactggataagccattaaaagaaaggattatgttattactgaggtaatctgatttatatgtcaaatttgaattcagcatagcaaac |
117 |
Q |
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| T |
42295269 |
atcatatatgaaaacaccggatatgccattgacagaaaagattatgttattactgaggtaatcggatttatatgtcaattttgaattcaacataacaaac |
42295368 |
T |
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| Q |
118 |
tcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaactactgcagaca |
187 |
Q |
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| T |
42295369 |
tcaaggttttcccttaacaacaaggttcct-cttcaaccaaatttatcaacaaaacaactactgcagaca |
42295437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 400 - 535
Target Start/End: Original strand, 42295730 - 42295864
Alignment:
| Q |
400 |
agttctggttgcaagtacttgatatctctaatttccgatcccaaactcacttgatctttttatggatttaacgtatttgggatcggagattagagaattc |
499 |
Q |
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| T |
42295730 |
agttctagttgcaagta-ttgatatctctaatttctgatcccaaactcacttgatcttttcatggattaagtgtaattgggaacagagattagagaattc |
42295828 |
T |
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| Q |
500 |
aaggacttgtagaggcaccgaagctgcaattggatc |
535 |
Q |
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| T |
42295829 |
aaggactagcagaggcacccaaggtgcaattggatc |
42295864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 42295476 - 42295543
Alignment:
| Q |
231 |
acatcaacatgtaatgataatataaacttctatgcttaacaat-atacaattcattttcaacttggat |
297 |
Q |
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| T |
42295476 |
acatcaacatctaatgataatataaacttctatgcttaacaataatacaattcatcttcaacttggat |
42295543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 20305184 - 20305130
Alignment:
| Q |
474 |
atttgggatcggagattagagaattcaaggacttgtagaggcaccgaagctgcaa |
528 |
Q |
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| T |
20305184 |
atttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaa |
20305130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 20309588 - 20309534
Alignment:
| Q |
474 |
atttgggatcggagattagagaattcaaggacttgtagaggcaccgaagctgcaa |
528 |
Q |
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| T |
20309588 |
atttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaa |
20309534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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