View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14058_low_10 (Length: 357)

Name: NF14058_low_10
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14058_low_10
NF14058_low_10
[»] chr3 (1 HSPs)
chr3 (19-313)||(31541573-31541858)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 31541858 - 31541573
Alignment:
Q  19 cacgtgtgaatgatggnnnnnnnctcttagatttttcatgaaaaatttgatgggaaaagtaatcaaattaagtgatctttgatcgcattatattgttgct 118  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  31541858 cacgtgtgaatgatggtttttctctcttagatttttcatgaaaaatttgatgggaaaagcaatcaaattaagtgatctttgatcgcattatattgttgtt 31541759  T
Q  119 ctctctttacagcctataatagttgatggtatactctgttaagtgttaacaatagtgctaatgggaacagtagcttgaaaa-gggttcaacctcgttaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  31541758 ctctctttacagcctataatagttgatggtatactctgttaagtgttaacaataatgctaatgggaacagtggcttgaaaaggggttcaacctcgttaat 31541659  T
Q  218 aattaatttaagatcatcnnnnnnnnnnnnnnnnnatatatatattggtccatgatccacctctattcatattacaattacaatttacattccttc 313  Q
    ||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31541658 aattaatttaagatcatc----------tttttttatatatatattggtccatgatccacctctattcatattacaattgcaatttacattccttc 31541573  T

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