View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_17 (Length: 250)
Name: NF14058_low_17
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26327461 - 26327239
Alignment:
| Q |
1 |
aatatatatattgattattaatattcatcgacaaaacaagtgaatatttcacactattaacatggcttcctaaaatgtttatgaaaatttttatgatcat |
100 |
Q |
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| T |
26327461 |
aatatatatattgattattaatatttatcgacaaaacaagtgaatatttcacactattaacatggcttcctaaaatgtttatgaaaaattttatgatcat |
26327362 |
T |
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| Q |
101 |
aaattcataaacgtgtttccatnnnnnnnnntgaacaaattcatagtaatatatacctgagagaagtacaagtaatagggaaagacatgagaggatgaaa |
200 |
Q |
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| T |
26327361 |
aaattcataaacgtgtttccat--aaaaaaatgaacaaattcatagtaatatatacctgagagaagtacaagtaatagggaaagacatgagaggatgaaa |
26327264 |
T |
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| Q |
201 |
aggtgcttttgtgaatccatgatga |
225 |
Q |
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| T |
26327263 |
aggtgcttttgtgagtccatgatga |
26327239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 26335233 - 26335151
Alignment:
| Q |
149 |
atatatacctgagagaagtacaagtaatagggaaagacatgagaggatgaaaaggtgcttttgtgaatccatgatgactagca |
231 |
Q |
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| T |
26335233 |
atatatacctaagagaagtacaggtactagggaaagacataagaggatgaaaaggtgcttttgtgagtccatgatgaatagca |
26335151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 26320733 - 26320661
Alignment:
| Q |
153 |
atacctgagagaagtacaagtaatagggaaagacatgagaggatgaaaaggtgcttttgtgaatccatgatga |
225 |
Q |
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| T |
26320733 |
atacctgagagaagtacaagtactagcgaaagccatagaaggatgaatagttgcttgtgtgaatccataatga |
26320661 |
T |
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