View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_19 (Length: 246)
Name: NF14058_low_19
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 52103051 - 52102823
Alignment:
| Q |
18 |
gaaacattaccttcttgagaagtattttgtattggattgcacagttacttggtgcagttgttgcttgcattcttctcaattcatgcactgctggaatggt |
117 |
Q |
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| T |
52103051 |
gaaacattaccttcttgagaagtattttgtattggattgcacagttacttggtgcagttgttgcttgcattcttctcaattcatgcactgctggaatggt |
52102952 |
T |
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| Q |
118 |
aactaaatgaat---ctacacatgcatttccttcacctaattttaaatataggctcaaatattgcacttttgagtttaattttgttgatgtgttctcttg |
214 |
Q |
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| T |
52102951 |
aactaaatgaatctactacacatgcatttccttcacctaatttaaaatataggctcaaa---tgcactttttagtttaattttgttgatgtgttctcttg |
52102855 |
T |
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| Q |
215 |
ttaatgaccttgatgacgtggcaatgttgaat |
246 |
Q |
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| T |
52102854 |
ttaatacatttgatgacgtggcaatgttgaat |
52102823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 7655665 - 7655767
Alignment:
| Q |
18 |
gaaacattaccttcttgagaagtattttgtattggattgcacagttacttggtgcagttgttgcttgcattcttctcaattcatgc-actgctggaatgg |
116 |
Q |
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|||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| || ||| |||| |||||||| |
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| T |
7655665 |
gaaacattacacttttgagaagtattttatattggattgcacagttacttggttcagttgttgcttgtattcttctcaagtc-tgctactggtggaatgg |
7655763 |
T |
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| Q |
117 |
taac |
120 |
Q |
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|||| |
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| T |
7655764 |
taac |
7655767 |
T |
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