View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_20 (Length: 245)
Name: NF14058_low_20
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_20 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 417005 - 417249
Alignment:
| Q |
1 |
cgggcagtgaccaatgcaggtgctctctccagcaagattcctgtcacatcaactgtgatccaaagtccagccgtcgagcaacctgcctcaaattcagaag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
417005 |
cgggtagtgaccaatgcaggtgctctctccagcaagattcctgtcacatcaactgtgatccaaaatccagccgtcgagcaacctgcctcgaatttggaag |
417104 |
T |
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| Q |
101 |
ttcgttctcaatcacgtcaagttgtctcaaatatggccattgattcccttgtgcctggtggaatcagagcccaatcgtcagagacaagaaatcctggttt |
200 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
417105 |
ttggttctcaatcacgtcaagttgtctcaaacatggccattgattcccttgtgcctggtggaatcagagcccgatcgtcagagacaagaaatcctggttt |
417204 |
T |
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| Q |
201 |
gaggaatcatcctattgaagctgcaccacaatcatctgtgatgaa |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
417205 |
gaggaatcatcctattgaagctgcaccacaatcatctgtgatgaa |
417249 |
T |
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