View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_5 (Length: 475)
Name: NF14058_low_5
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_5 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 10419056 - 10418735
Alignment:
| Q |
12 |
ataatacttatcatgtgtacgtattcttttgcaacaataaaaaatcacgtgtaatgtttcgcaagctnnnnnnnnntagcgttgaatttatagacttatg |
111 |
Q |
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| T |
10419056 |
ataatacttatcatgtgtacgtattcttttgcaacaataaaaaatcacgtgtaatgtttcgcaagctaaaaaaaa-tagcgttgaatttatagact-ata |
10418959 |
T |
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| Q |
112 |
cattaaaacaaaattaaaaggcattctgacttttgtgttaatatttggtgtattaattggcatcgcaagaaagtcaacccctcctgggatccttatatgc |
211 |
Q |
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| T |
10418958 |
cattaaaacaaaattaaaaggcattctgacttttgtgttaatatttggtgtattaattggcatcgcatgaaagtcaacccctcctgggatccttatatgc |
10418859 |
T |
|
| Q |
212 |
cgactcattcggcactaattaatttcaacccattcctcgctgacttcttgtcattagccctagagttagagtaatgatgttattttgggacaaaaac-aa |
310 |
Q |
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||| || | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
10418858 |
cgattcctccggcactaattaatttcaacccattcctcgctgacttcttgtcattatccctagagttagagtaatgatgttattttgggacaaaaacaaa |
10418759 |
T |
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| Q |
311 |
agagatatagtaaaaacacccctt |
334 |
Q |
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|||||||| ||||||||||||||| |
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| T |
10418758 |
agagatatggtaaaaacacccctt |
10418735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 10418717 - 10418656
Alignment:
| Q |
369 |
gatatagctaagaaacttattagtataaactttgtctttaaaatagaaatttttacttttgt |
430 |
Q |
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| T |
10418717 |
gatatagctaagaaatctattagtataaactttgtcttcaaaatacaagtttttatttttgt |
10418656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 33085378 - 33085332
Alignment:
| Q |
387 |
attagtataaactttgtctttaaaatagaaatttttacttttgtctt |
433 |
Q |
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| T |
33085378 |
attagtagaaactttgtcttgaaaatataaatttttacttttgtctt |
33085332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 12487115 - 12487161
Alignment:
| Q |
386 |
tattagtataaactttgtctttaaaatagaaatttttacttttgtct |
432 |
Q |
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| T |
12487115 |
tattagtagaaattttgtcttgaaaatacaaatttttacttttgtct |
12487161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 2839100 - 2839057
Alignment:
| Q |
387 |
attagtataaactttgtctttaaaatagaaatttttacttttgt |
430 |
Q |
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| T |
2839100 |
attagtagaaactttgtcttgaaaatataaatttttacttttgt |
2839057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 23131454 - 23131497
Alignment:
| Q |
387 |
attagtataaactttgtctttaaaatagaaatttttacttttgt |
430 |
Q |
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| T |
23131454 |
attagtagaaactttgtcttgaaaatataaatttttacttttgt |
23131497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 83554 - 83595
Alignment:
| Q |
392 |
tataaactttgtctttaaaatagaaatttttacttttgtctt |
433 |
Q |
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| T |
83554 |
tataaactttgtcttcgaaatataaatttttacttttgtctt |
83595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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