View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_6 (Length: 450)
Name: NF14058_low_6
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 14987663 - 14987987
Alignment:
| Q |
16 |
atgctagagaaagttcagctgagttaagaaatatctctaactgcataaagaaaaatattcaaggactttgtaacgtgaaaaatatataaacagaaaaaag |
115 |
Q |
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| T |
14987663 |
atgctagagaaagttcagctgagttaagaaatatctctaactgcataaagaaaaatattcaaggactttgttacatgaaaaatatataaacagaaaaaag |
14987762 |
T |
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| Q |
116 |
taatattacatgacatgaattatgtataaacaagcacatataatagtacctgaatcaactggtttcgatggttgtcaatctgcaaaatatacatacattt |
215 |
Q |
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| T |
14987763 |
taatattacatgacatgaattatgtataaacaagcacatataatagtacctggatcaactggtttcgatggttgtcaatctgcaaaatatacatacattt |
14987862 |
T |
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| Q |
216 |
tatttatatactatgtcatttatcaaataacaattgacactacttataaataattgtaagttacttacctgaatattaatgtaatcttctgtatcatcaa |
315 |
Q |
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| T |
14987863 |
tatttgtatac----------ataaaataacaattgacactagttata---aattctaagttacttacctgaatattaatgtaatcttctgtatcatcaa |
14987949 |
T |
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| Q |
316 |
tgtaccctcgtagctgtaaatagaaattaattagaact |
353 |
Q |
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| T |
14987950 |
tgtaccctcgaagctgtaaatagaaattaattagaact |
14987987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 14970814 - 14970879
Alignment:
| Q |
276 |
ttacttacctgaatattaatgtaatcttctgtatcatcaatgtaccctcgtagctgtaaatagaaa |
341 |
Q |
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| T |
14970814 |
ttacttacctgaatattaatataatcttctgtatcatcaatatactctcttagctgtaaatggaaa |
14970879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 14988107 - 14988150
Alignment:
| Q |
384 |
atgcgatatgacttgaaaataaatttataagaagtaaacatctc |
427 |
Q |
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| T |
14988107 |
atgcaatatgacttgaaaataaatttataagtagtaaacatctc |
14988150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 14970695 - 14970748
Alignment:
| Q |
153 |
atataatagtacctgaatcaactggtttcgatggttgtcaatctgcaaaatata |
206 |
Q |
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| T |
14970695 |
atataatagcacctgaatcagctgatttcgatagttgtccatctgcaaaatata |
14970748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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