View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_7 (Length: 404)
Name: NF14058_low_7
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 153 - 391
Target Start/End: Complemental strand, 13023717 - 13023481
Alignment:
| Q |
153 |
tgtttagtatttatcctaataatttaatcaatgattgataatatttagtttacagttagttgttcactttagataaccgaatctacaaagtatattttta |
252 |
Q |
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| T |
13023717 |
tgtttagtatttatcctaataatttaatcaatgattgataatatttagtttacagttagttgttcactttagataaccgaatctacaaagtatattttta |
13023618 |
T |
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| Q |
253 |
cctcaattttattacttattaattaatgaatttggctaataaagagtgaagttaaaaaa-tatgagttatattatttcaataagttcatgatttattatt |
351 |
Q |
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| T |
13023617 |
cctcaattttattacttattaattaatgaatttggctaataaagagtgaagttaaaaaattatgagttatattatttcaataagttcatgatttattatt |
13023518 |
T |
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| Q |
352 |
atgatgatgtatcacgtgatatccgccttggattttgttc |
391 |
Q |
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| T |
13023517 |
---atgatgtatcacgtgatattcgccttggattttgttc |
13023481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13023843 - 13023704
Alignment:
| Q |
1 |
cacaccatgccatgacggaaatctatcaccacaaggcatgaatgtcgttcatctaaagtgagtaaaatataaaggta-aaaagtaaacattgttatttca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13023843 |
cacaccatgccatgacggaaatctatcaccacaaggcatgaatgtcgttcatctaaagtgagtaaaatataaaggtaaaaaagtaaacattgttatttca |
13023744 |
T |
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| Q |
100 |
acaaattcataatttattatgatatatgtttagtatttat |
139 |
Q |
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| T |
13023743 |
acaaattcataatttattatgatatatgtttagtatttat |
13023704 |
T |
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