View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14058_low_9 (Length: 365)
Name: NF14058_low_9
Description: NF14058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14058_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 2451711 - 2452060
Alignment:
| Q |
18 |
gttaggtggctcagcttttaagttaacggttaaggagtttaaatgtccaagtttcaagtcctggcaaa-agagaataacactaacataccaattagccac |
116 |
Q |
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| T |
2451711 |
gttaggtggctcagcttttaagttaacggttaaggagtttaaatgtccaagtttcaagtcctggcaaagagagaataacactaacataccaattagccac |
2451810 |
T |
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| Q |
117 |
ttgataatatctcttagatgtttaccatgctttaattgtctatgcatgctactactttcctcatatgttaaactagtatggatatctatgccaaacacga |
216 |
Q |
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| T |
2451811 |
ttgataatatcccttagatgtttaccatgcgttaattgtctatgcatgctactactttcctcatatgttaaactattatggatatctatgccaaacacga |
2451910 |
T |
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| Q |
217 |
actagaattttgtcatatttaaaatattttgtggcaaacgtggattagatatggatacatgtggtttctttctgtccaatgagtatccacataagtgttg |
316 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2451911 |
actagaattttgtcatatttaaaatattttgtactgagcgtggattagatatggatacatgtgatttctttctgtccaatgagtatccacataagtgttg |
2452010 |
T |
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| Q |
317 |
actccctaataaagtccaacgatggt-acatacctcggtttaactttgtt |
365 |
Q |
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| T |
2452011 |
actccctaataaagtccaacaatggtaacatatctcggtttaactttgtt |
2452060 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 7333247 - 7333191
Alignment:
| Q |
188 |
actagtatggatatctatgccaaacacgaactagaattttgtcatatttaaaatatt |
244 |
Q |
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| T |
7333247 |
actagtatggaaacccgtgccaaacacgagctagaatttcgtgatatttaaaatatt |
7333191 |
T |
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