View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14059_high_1 (Length: 564)
Name: NF14059_high_1
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Original strand, 7006963 - 7007492
Alignment:
| Q |
19 |
gaatggccatgtaaaaatattttacatatgtagtttaatatatagtctatcatatttttattgctttttgtggaacttggattgcctgaagtcggtaatc |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7006963 |
gaatgaccatgtaaaaatattttacatatgtagtttaatatatagtctatcatatttttattgctttttgtggaacttggattgcctgaagtcggtaatc |
7007062 |
T |
|
| Q |
119 |
ctctcattcactcggtcggtacatcattggtcgttggaatttgatatggatccaacaacggcatgatatgccgactctgtgaatgcggagaatttctgac |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |
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| T |
7007063 |
ctctcattcactcgatcggtacatcattggtcgttggaatttgatatggatccaacaactgcatgatgtgccgactccgtgaatgcggagaatttctgac |
7007162 |
T |
|
| Q |
219 |
ttcaaataatccgaattcgtgtttcgagtgatgaagtttgtagggttgatgtgttaatttgttttgtgttatatagaaaggatttgtctaccgtgagaac |
318 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007163 |
ttcagataatccgaatttgtgtttcgagtgatgaagtttgtagggttgatgtgttaatttgttttgtgttatatagaaaggatttgtctaccgtgagaac |
7007262 |
T |
|
| Q |
319 |
cacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7007263 |
cacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctg |
7007362 |
T |
|
| Q |
419 |
aagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaac |
518 |
Q |
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| T |
7007363 |
aagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaac |
7007462 |
T |
|
| Q |
519 |
ctactaagtttgatatttgcaccacccttt |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
7007463 |
ctactaagtttgatatttgcaccacccttt |
7007492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 55 - 548
Target Start/End: Original strand, 7010067 - 7010570
Alignment:
| Q |
55 |
aatatatagtctatcatatttttattgctttttgtggaacttggattgcctgaagtcggtaatcctctcattcactcggtcggtacatcattggtcgttg |
154 |
Q |
| |
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|||||||||||||| ||||||||| || ||||| ||| ||||||||| || |||||| ||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
7010067 |
aatatatagtctatgctatttttatagcattttgcagaatttggattgcatgtagtcggcaatcctctcattcactcagccggtacatcattggtcgttg |
7010166 |
T |
|
| Q |
155 |
gaatttgatatggatccaacaacggcatgatatgccgactctgtgaatgcggagaatttctgacttcaaataatccgaattcgtgtttcgagtgatgaag |
254 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||| ||| |||||||||||||||||||||| |||| ||||||| || ||||| | || |||||| |
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|
| T |
7010167 |
gaatttgatcaggatccaacaactacatgatgtgccggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacaagcgatgaat |
7010266 |
T |
|
| Q |
255 |
tttgtagggttgatgtgttaatttgtt----------ttgtgttatatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatgg |
344 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7010267 |
tttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatgg |
7010366 |
T |
|
| Q |
345 |
acgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatca |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7010367 |
acgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatca |
7010466 |
T |
|
| Q |
445 |
ttcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatttgcaccacc |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7010467 |
ttcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatatgcaccacc |
7010566 |
T |
|
| Q |
545 |
cttt |
548 |
Q |
| |
|
|||| |
|
|
| T |
7010567 |
cttt |
7010570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 6e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 293 - 512
Target Start/End: Original strand, 1358572 - 1358791
Alignment:
| Q |
293 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
392 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
1358572 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1358671 |
T |
|
| Q |
393 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
492 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1358672 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1358771 |
T |
|
| Q |
493 |
agtttcattgctcacacacc |
512 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
1358772 |
agtttcattgcacacacacc |
1358791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 293 - 512
Target Start/End: Original strand, 1374124 - 1374343
Alignment:
| Q |
293 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
392 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
1374124 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1374223 |
T |
|
| Q |
393 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
492 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1374224 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1374323 |
T |
|
| Q |
493 |
agtttcattgctcacacacc |
512 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
1374324 |
agtttcattgcacacacacc |
1374343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 293 - 512
Target Start/End: Original strand, 1394671 - 1394890
Alignment:
| Q |
293 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
392 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1394671 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1394770 |
T |
|
| Q |
393 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
492 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1394771 |
ttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaatgcatc |
1394870 |
T |
|
| Q |
493 |
agtttcattgctcacacacc |
512 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1394871 |
agtttcattgcacacacacc |
1394890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 293 - 512
Target Start/End: Original strand, 1350666 - 1350885
Alignment:
| Q |
293 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
392 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1350666 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1350765 |
T |
|
| Q |
393 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
492 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1350766 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1350865 |
T |
|
| Q |
493 |
agtttcattgctcacacacc |
512 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1350866 |
agtttcattgcacacacacc |
1350885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 293 - 512
Target Start/End: Original strand, 1384320 - 1384539
Alignment:
| Q |
293 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
392 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1384320 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1384419 |
T |
|
| Q |
393 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
492 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1384420 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1384519 |
T |
|
| Q |
493 |
agtttcattgctcacacacc |
512 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1384520 |
agtttcattgcacacacacc |
1384539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 293 - 512
Target Start/End: Original strand, 1390425 - 1390644
Alignment:
| Q |
293 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
392 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1390425 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1390524 |
T |
|
| Q |
393 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
492 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1390525 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1390624 |
T |
|
| Q |
493 |
agtttcattgctcacacacc |
512 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1390625 |
agtttcattgcacacacacc |
1390644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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