View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14059_high_2 (Length: 415)
Name: NF14059_high_2
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 39090954 - 39090590
Alignment:
| Q |
19 |
acaataatctttccatctatccatagtgaccacacaacagacaaccaaatcagatgtctgattctctttaactttttatctcgaaacatatcaccatgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39090954 |
acaataatctttccatctatccatagtgaccacacaacagacaaccaaatcagatgtctgattctctttaactttttatctcgaaacatatcaccatgtt |
39090855 |
T |
|
| Q |
119 |
gatgcaagttagctacactcgtttctgcataagctcttataaagcctagccaacaatagtaagtgctttttgcagcatcttacacgccgatttaaaagag |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39090854 |
gatgcaagttagctacacccgtttctgcataagctcttataaagcctagccaacaatagtaagtgctttttgcagcatcttacacgccgatttaaaagag |
39090755 |
T |
|
| Q |
219 |
aaccctgaggaagaatcatgtatgcatgcccaattgtctgtcattccggcctgcacatctgtccttgcaatgacagattctaattcaagcagctgatcct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39090754 |
aaccctgaggaagaatcatgtatgcatgcccaattgtctgtcattccggcctgcacatctgtccttgcaatgacagattctaattcaagcagctgatcct |
39090655 |
T |
|
| Q |
319 |
tctcatacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctacacgctcctt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39090654 |
tctcatacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctacacgctcctt |
39090590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 379
Target Start/End: Complemental strand, 39081430 - 39081229
Alignment:
| Q |
185 |
tttttgcagcatcttacacgccgatttaaaagagaaccctgaggaagaatcatgtatg-------catgcccaattgtctgtcat-tccggcctgcacat |
276 |
Q |
| |
|
||||||||||| |||| ||| |||||||| ||||||||||| | ||||||||||||| | | |||||||||| ||| ||| ||||||| | |
|
|
| T |
39081430 |
tttttgcagcagcttatacgtcgatttaacagagaaccctgcagcagaatcatgtatgatgtatcccttcccaattgtc---catatcctgcctgcataa |
39081334 |
T |
|
| Q |
277 |
ctgtccttgcaatgacagattctaattcaagcagctgatccttct--catacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctac |
374 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
39081333 |
ccgtccctgcaatgacagattctaattcaagcagctgatccttctcccaaacgaacaatgatcacctccagttccagtgccaaatccacatgttgcctac |
39081234 |
T |
|
| Q |
375 |
acgct |
379 |
Q |
| |
|
|||| |
|
|
| T |
39081233 |
gcgct |
39081229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University