View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14059_low_1 (Length: 761)
Name: NF14059_low_1
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_low_1 |
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| [»] scaffold0090 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 20 - 753
Target Start/End: Complemental strand, 23552629 - 23551896
Alignment:
| Q |
20 |
ctgtgcatgaacaattttgcaaacatttgaccttacattcatccagtgtcatattttcattaacccaacaatttttagtatctggtaccttcattttaac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552629 |
ctgtgcatgaacaattttgcaaacatttgaccttacattcatccagtgtcatattttcattaacccaacaatttttagtatctggtaccttcattttaac |
23552530 |
T |
|
| Q |
120 |
aagtttaagaaatccatctcgactctcgtctccacaagtccaatttccgcctcgcacgcatccttgtgtccagtccattgcattccactgttgaggtgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552529 |
aagtttaagaaatccatctcgactctcgtctccacaagtccaatttccgcctcgcacgcatccttgtgtccagtccattgcattccactgttgaggtgat |
23552430 |
T |
|
| Q |
220 |
ttcggcttaaacccgtctaagcacttacaaatcggcgatccaccaatgacacaatttccatttgcaccacagatgttataatcatcacacctatcttgtg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552429 |
ttcggcttaaacccgtctaagcacttacaaatcggcgatccaccaatgacacaatttccatttgcaccacagatgttataatcatcacacctatcttgtg |
23552330 |
T |
|
| Q |
320 |
gaaagttttggtaaacattccatgttttcgattcaggaatccaaatgagacgttgacgaagtaaaagagtttgattcaaaacaagtatggtaatcacaga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552329 |
gaaagttttggtaaacattccatgttttcgattcaggaatccaaatgagacgttgacgaagtaaaagagtttgattcaaaacaagtatggtaatcacaga |
23552230 |
T |
|
| Q |
420 |
ggtgttcttgagtgtgtatatataataaacttcgtcttcattgtttacgaattcgtaactataaactggattctcttgcaatgcaaatacgttactaaat |
519 |
Q |
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| T |
23552229 |
ggtgttcttgagtgtgtatatataataaacttcgtcttcattgtttacgaattcgtaactataaactggattctcttgcaatgcaaatacgttactaaat |
23552130 |
T |
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| Q |
520 |
ggtcctgttctaaagatctcaactgagtctttccaaataaacatttcaggaataatgctaagtctcatacctgaagtaaaattacccgaagacgggtctt |
619 |
Q |
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||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552129 |
ggtcctgttctgaaaatctcaactgaatctttccaaataaacatttctggaataatgctaagtctcatacctgaagtaaaattacccgaagacgggtctt |
23552030 |
T |
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| Q |
620 |
cccagtttttccatgcattgaaacccctatttataccacttttcttgtcccaaccaatcttcattcctgctaatattgtattatcaggataatcaaagct |
719 |
Q |
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| T |
23552029 |
cccagtttttccatgcattgaaacccctatttataccacttttcttgtcccaaccaatcttcattcctgctaatattgtattatcaggataatcaaagct |
23551930 |
T |
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| Q |
720 |
ctgccacaagaaattctcttcatccctttcatct |
753 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23551929 |
ttgccacaagaaattctcttcatccctttcatct |
23551896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 379
Target Start/End: Original strand, 9714 - 9921
Alignment:
| Q |
172 |
cgcacgcatccttgtgtccagtccattgcattccactgttgaggtgatttcggcttaaacccgtctaagcacttacaaatcggcgatccaccaatgacac |
271 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| || |||||||| ||||||| ||||| ||| ||| || |||||| || ||| | | |
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| T |
9714 |
cgcacacatccttgtgtccagtccattgcactccactgttgtggcgatttcggtataaacccatctaaacaccgacacatgggcgatgcattaatcatgc |
9813 |
T |
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| Q |
272 |
aatttccatttgcaccacagatgttataatcatcacacctatcttgtggaaagttttggtaaacattccatgttttcgattcaggaatccaaatgagacg |
371 |
Q |
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| T |
9814 |
atagcccattttccctacaaacattatacacatcacaactatcttgtggtaaagtttggtaaacattccatgttttggattctgaaatccaaatgaggcg |
9913 |
T |
|
| Q |
372 |
ttgacgaa |
379 |
Q |
| |
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| T |
9914 |
tagacgaa |
9921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 733
Target Start/End: Original strand, 10221 - 10290
Alignment:
| Q |
664 |
ttgtcccaaccaatcttcattcctgctaatattgtattatcaggataatcaaagctctgccacaagaaat |
733 |
Q |
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| T |
10221 |
ttgtcccatccagccttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaat |
10290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 392
Target Start/End: Original strand, 22691445 - 22691794
Alignment:
| Q |
43 |
catttgaccttacattcatccagtgtcatattttcattaacccaacaatttttagtatctggtaccttcattttaacaagtttaagaaatccatctcgac |
142 |
Q |
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|||||||| || |||||||| |||||||| ||| |||||| |||| ||||| | |||||||| | |||||| || || |||| ||||||| || | | |
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| T |
22691445 |
catttgactttgcattcatcaagtgtcatgtttgcattaatccaagaatttgttgtatctggaaatttcattccaataaatttacgaaatccgtccctat |
22691544 |
T |
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| Q |
143 |
tctcgtctccacaagtccaatttccgcctcgcacgcatccttgtgtccagtccattgcattccactgttgaggtgatttcggcttaaacccgtctaagca |
242 |
Q |
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| | | | |||||| ||||||||||| ||||||||||||||| ||||||||| ||||||| ||| | ||||||| || ||||| || ||||| || |
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| T |
22691545 |
ttttgaccccacaactccaatttccgttgcgcacgcatccttgtttccagtccaagctattccacagttcaagtgattttggtttaaatccatctaaaca |
22691644 |
T |
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| Q |
243 |
cttacaaatcggcgatccaccaatgacacaatttccatttgcaccacagatgttataatcatcacacctatcttgtggaaagttttggtaaacattccat |
342 |
Q |
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||| | ||||||| |||||| |||| ||||||||| ||||| | |||||| |||| || ||||| ||| | ||| |||||||||||| |
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| T |
22691645 |
tcgacatgtttgcgatccttcaatgatgcaatatccatttgctccacaaacattataaacatcgcaattatctattggcagcgattgataaacattccat |
22691744 |
T |
|
| Q |
343 |
gttttcgattcaggaatccaaatgagacgttgacgaagtaaaagagtttg |
392 |
Q |
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||| |||||||||| ||||||| ||| |||||||||| |||||||||| |
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| T |
22691745 |
gttctcgattcaggtatccaaaggaggcgttgacgaacagaaagagtttg |
22691794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 28426950 - 28426871
Alignment:
| Q |
151 |
ccacaagtccaatttccgcctcgcacgcatccttgtgtccagtccattgcattccactgttgaggtgatttcggcttaaa |
230 |
Q |
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|||||| |||||||||| | ||||| |||||||||||||||||||||| |||||| |||| |||||||| |||||||| |
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| T |
28426950 |
ccacaactccaatttccactacgcacacatccttgtgtccagtccattgaattccattgttccggtgattttggcttaaa |
28426871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 28418411 - 28418339
Alignment:
| Q |
158 |
tccaatttccgcctcgcacgcatccttgtgtccagtccattgcattccactgttgaggtgatttcggcttaaa |
230 |
Q |
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| T |
28418411 |
tccaatttccaccgcgcacacatccttgcgtccagtccattgaattccattgctgtggtgattttggcttaaa |
28418339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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