View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14059_low_10 (Length: 250)
Name: NF14059_low_10
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 13137326 - 13137114
Alignment:
| Q |
21 |
actgacggaaagaaatggaggtgcggtaaggacacagtacctaatcagaagtattgtgaacgtcacatgcacagaggtcgaaatcgttcaagaaagcttg |
120 |
Q |
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| T |
13137326 |
actgacggaaagaaatggaggtgcggcaaggacacagtacctaatcagaagtattgtgaacgtcacatgcacagaggtcgaaatcgttcaagaaagcttg |
13137227 |
T |
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| Q |
121 |
tggaaacatctcaacttaactctcctttgnnnnnnnntcctagtggtggcggcaagtcacatgcaaaactagtcccaaacattaaatcttcagtttcaaa |
220 |
Q |
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| T |
13137226 |
tggaaacatctcaacttaactctcctttgaaaacaaatcctagtggtggtggcaagtcacatgcaaaactagtcccaaacattaaatcttcagtttcaaa |
13137127 |
T |
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| Q |
221 |
tccaaaccctttg |
233 |
Q |
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| T |
13137126 |
tccaaaccctttg |
13137114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 7246604 - 7246548
Alignment:
| Q |
69 |
aagtattgtgaacgtcacatgcacagaggtcgaaatcgttcaagaaagcttgtggaa |
125 |
Q |
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| T |
7246604 |
aagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
7246548 |
T |
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