View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14059_low_11 (Length: 213)
Name: NF14059_low_11
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 47916027 - 47916200
Alignment:
| Q |
21 |
gaagcccgggttaatttgggttgaagggatggtaggtcttaagatccgacacaattccttcaattgatccaactgcagcaacaagagtgacaatcaaaca |
120 |
Q |
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| T |
47916027 |
gaagcctgggttaatttgggttgaagggatggtaggtcttaagatctgacacaattccttcaattgatccaactgcagcaacaagagtgacaatcaaaca |
47916126 |
T |
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| Q |
121 |
aaaaccacttagcaatttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatct |
194 |
Q |
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| T |
47916127 |
aaaaccacttagcaatttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatct |
47916200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 47901383 - 47901506
Alignment:
| Q |
71 |
acaattccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaaccacttagcaatttcatcccaatccatatagtagaatacttgggca |
170 |
Q |
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| T |
47901383 |
acaattccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaccaacttagcaatttcattccaatccatatagaagaatatttgggca |
47901482 |
T |
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| Q |
171 |
cttgggcttgtgtcaagtacatct |
194 |
Q |
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| T |
47901483 |
ctttggcttgtgtcaagtacatct |
47901506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 47907630 - 47907724
Alignment:
| Q |
74 |
attccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaaccacttagcaatttcatcccaatccatatagtagaatacttggg |
168 |
Q |
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| T |
47907630 |
attcctacaattgatccaactgcagcaacaagagtgacaatcaagcaaaacccacttagaagtttcattccaatccatatagaagaatatttggg |
47907724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 47922512 - 47922632
Alignment:
| Q |
74 |
attccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaaccacttagcaatttcatcccaatccatatagtagaatacttgggcactt |
173 |
Q |
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| T |
47922512 |
attccttggattgatgcaacaacaccaacaagagtgacaatcaaacaaaatccacttagcagtttcatccttatccatatacaagaatacttgggtactc |
47922611 |
T |
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| Q |
174 |
gggcttgtgtcaagtacatct |
194 |
Q |
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| T |
47922612 |
tagcttgtttcaggtacatct |
47922632 |
T |
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