View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14059_low_3 (Length: 452)
Name: NF14059_low_3
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 10031217 - 10031636
Alignment:
| Q |
19 |
gatcattccctccagcaaaagtgattatagccaggatgttgtttttagcgaattacatgggatgaataaagagatacaagatatataagaggtaaaggtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10031217 |
gatcattccctccagcaaaagtgattatagccaggatgttgtttttagcgaattacatgggatgaataaagagatacagaatatataagaggtaaaggtg |
10031316 |
T |
|
| Q |
119 |
aacactaaccactacatccggacgaacttcttcccactcacaagccagcaatatccctgttcttgctaatccagtttgtattatttacattcttgcaagc |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10031317 |
aacactaaccactacatccggacgaacttcttcccgctcacaagccagcaatatccctgttcttgctaacccagtttgtattatttacattcttgcaagc |
10031416 |
T |
|
| Q |
219 |
aaactattatactgcataaatggatcagaacatacaatgaaagtaacactgaaattcaaaaacagtacatttcacatggtcaaggaatacagataaaaca |
318 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10031417 |
aaactattatattgcat-aatggatcagaacatacaatgaaagtaacactgaaattcaaaaacagtacatttcacatggtcaaggaatacagataaaaca |
10031515 |
T |
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| Q |
319 |
agtgacaagtttttaaaacgttagacatgagttctatgcggtacatcatacaaaggaacatattgaatgttgccatgataatcaaataagcattctgaca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
10031516 |
agtgacaagtttttaaaacgttagacatgagttctatgcggtacatcatacaaaggaacatattgaatgttgccatgctaataaaataagcattctgaca |
10031615 |
T |
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| Q |
419 |
aaacataccccagcttcccct |
439 |
Q |
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||||||||||||||||||||| |
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| T |
10031616 |
aaacataccccagcttcccct |
10031636 |
T |
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