View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14059_low_6 (Length: 335)
Name: NF14059_low_6
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 19597662 - 19597353
Alignment:
| Q |
1 |
caagaatccaccacctcctccaccaccgccaccaaaactatccgattctaatgcaccaccatcttcatcaaagaaaccactaccttcttcatcagagaaa |
100 |
Q |
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| T |
19597662 |
caagaatccaccacctcctccaccaccgccaccaaaactatccgattctaatgcaccaccatcttcatcaaagaacccacta---tcttcatcagagaaa |
19597566 |
T |
|
| Q |
101 |
ccaccatcttcactgcagccacatcaatcttcactgccaccaaggccattttcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaat |
200 |
Q |
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| T |
19597565 |
ccaccatcttcactgcagccacagcaatcttcattgccacgaaggccgttttcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaat |
19597466 |
T |
|
| Q |
201 |
ccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597465 |
ccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcg |
19597366 |
T |
|
| Q |
301 |
aacactgtattat |
313 |
Q |
| |
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||||||||||||| |
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| T |
19597365 |
aacactgtattat |
19597353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19597731 - 19597647
Alignment:
| Q |
1 |
caagaatccaccacctcctccaccaccgccaccaaaactatccgattctaatgcaccaccatcttcatcaaagaaaccactacct |
85 |
Q |
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| T |
19597731 |
caagaatccaccacctcctccaccaccgccaccaaaactatccgattctaatgcaccgccatcttcatccaagaatccaccacct |
19597647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 19597793 - 19597716
Alignment:
| Q |
8 |
ccaccacctcctccaccaccgccaccaaaactatccgattctaatgcaccaccatcttcatcaaagaaaccactacct |
85 |
Q |
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| T |
19597793 |
ccacctcctccaccaccaccaccaccaaaactatccgattctaatgcaccaccatcttcatccaagaatccaccacct |
19597716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 19597859 - 19597788
Alignment:
| Q |
14 |
cctcctccaccaccgccaccaaaactatccgattctaatgcaccaccatcttcatcaaagaaaccactacct |
85 |
Q |
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||||| || ||||| |||||||||| | || ||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
19597859 |
cctccccctccaccaccaccaaaaccacccaattctgatgcaccaccatcttcatcaaagaacccaccacct |
19597788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 19592874 - 19592817
Alignment:
| Q |
186 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
243 |
Q |
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|||||||||| ||||||||| |||||| |||| |||||| ||||| |||||||||||| |
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| T |
19592874 |
agctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatca |
19592817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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