View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14059_low_7 (Length: 327)
Name: NF14059_low_7
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14059_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 241637 - 241401
Alignment:
| Q |
1 |
tcaatatcacatcagccttatcatcctgataatcacgtgatccaataagtatgatatctccgttagcaatccaaaccttcttgtgcatcttaccacggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
241637 |
tcaatatcacatcagccttatcatcctgataatcacgtaatccaataagtattatatctccgttagcaatccaaaccttcttgtgcatcttaccccggat |
241538 |
T |
|
| Q |
101 |
atgacagagacgttttctgatgttgttatcgttgtcgatgcaattcgcttccaaccgtccgtttccaagcatacgtgttacctgtgcgtattcttgaccg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241537 |
atgacagagacgttttctgatgttgttctcgttgtcgatgcaattcgcttccaaccgtccgtttccaagcatacgtgttacctgtgcgtattcttgaccg |
241438 |
T |
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| Q |
201 |
tcttctttgaagatcagttcccgtttctcatcgtcag |
237 |
Q |
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| T |
241437 |
tcttctttgaagatcagttcgcgtttctcatcgtcag |
241401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 10520589 - 10520700
Alignment:
| Q |
1 |
tcaatatcacatcagccttatcatcctgataatcacgtgatccaataagtatgatatctccgttagcaatccaaaccttcttgtgcatcttaccacggat |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||| | |||| ||| || ||||| || ||||||||||||||||||||||||||| |||||||| |
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| T |
10520589 |
tcaagatcacatcagccttatcatcctgataatcacgcaacccaacaagaataatatccccagcagcaatccaaaccttcttgtgcatctttccacggat |
10520688 |
T |
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| Q |
101 |
atgacagagacg |
112 |
Q |
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| T |
10520689 |
atgacagagacg |
10520700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 10520735 - 10520787
Alignment:
| Q |
159 |
ccgtttccaagcatacgtgttacctgtgcgtattcttgaccgtcttctttgaa |
211 |
Q |
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| T |
10520735 |
ccgtttccaagcatacgaagaacctgtgcgtattcttgaccatcttccttgaa |
10520787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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