View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14059_low_8 (Length: 285)

Name: NF14059_low_8
Description: NF14059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14059_low_8
NF14059_low_8
[»] chr1 (6 HSPs)
chr1 (1-276)||(3534485-3534760)
chr1 (144-186)||(12772146-12772188)
chr1 (101-181)||(9007773-9007854)
chr1 (141-186)||(15381849-15381894)
chr1 (145-190)||(44622808-44622853)
chr1 (71-116)||(52363015-52363060)
[»] chr4 (2 HSPs)
chr4 (71-163)||(924333-924425)
chr4 (121-181)||(4045052-4045112)
[»] chr3 (1 HSPs)
chr3 (122-181)||(55195845-55195904)
[»] chr7 (2 HSPs)
chr7 (139-181)||(34807844-34807886)
chr7 (144-186)||(45199858-45199900)
[»] chr5 (1 HSPs)
chr5 (144-186)||(4985833-4985875)
[»] chr2 (1 HSPs)
chr2 (94-184)||(12126238-12126327)
[»] chr8 (1 HSPs)
chr8 (122-163)||(35149909-35149950)
[»] chr6 (1 HSPs)
chr6 (121-181)||(15126293-15126353)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 3534485 - 3534760
Alignment:
Q  1 tttgtttagaagaaaatcattcaggtctattgtttttgcatagaatataataaacctaataatgtatctttgaacataactcagttgacagaaataatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  3534485 tttgtttagaagaaaatcattcaggtctattgtttttgcatagaatataataaacctaataatgtatccttgaacataactcagtagacaaaaataatga 3534584  T
Q  101 attgttataggtagggttttggttcgaactccaaacaactcatttattcatcttaaaaagtgatttctaaccattaaactacttgatcaataaataataa 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3534585 attgttatatgtagggttttggttcgaactccaaacaactcatttattcatcttaaaaagtgatttctaatcattaaactacttgatcaataaataataa 3534684  T
Q  201 accaaatagtgattgtcacaaatatttttgttaaggnnnnnnnngataaaatttacatatctttcttcatattctt 276  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  3534685 accaaatagtgattgtcacaaatatttttgttaaggaaaaaaaagataaaatttacatatctttcttcatattctt 3534760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 12772146 - 12772188
Alignment:
Q  144 ttattcatcttaaaaagtgatttctaaccattaaactacttga 186  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||    
T  12772146 ttattcaccttaaaaggtgaattctaaccattaaactacttga 12772188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 9007854 - 9007773
Alignment:
Q  101 attgttataggtagggttttggttcgaactccaaacaactcatttattcatctt-aaaaagtgatttctaaccattaaacta 181  Q
    ||||||||| ||||||||  | ||||||| || |||| |||||||||||| ||| ||||||||| ||||| ||| |||||||    
T  9007854 attgttatatgtagggttgggattcgaaccccgaacatctcatttattcaccttgaaaaagtgaattctagccaataaacta 9007773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 15381894 - 15381849
Alignment:
Q  141 catttattcatcttaaaaagtgatttctaaccattaaactacttga 186  Q
    |||||||| |||||||||||||| |||||| |||||||||| ||||    
T  15381894 catttatttatcttaaaaagtgaattctaatcattaaactatttga 15381849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 44622853 - 44622808
Alignment:
Q  145 tattcatcttaaaaagtgatttctaaccattaaactacttgatcaa 190  Q
    ||||||||||||||||| | ||||||| |||| |||||||||||||    
T  44622853 tattcatcttaaaaagtaaattctaacaattatactacttgatcaa 44622808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 52363015 - 52363060
Alignment:
Q  71 tgaacataactcagttgacagaaataatgaattgttataggtaggg 116  Q
    ||||||||  ||||||||||||||||||| ||||||||| ||||||    
T  52363015 tgaacatagttcagttgacagaaataatgcattgttatatgtaggg 52363060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 924425 - 924333
Alignment:
Q  71 tgaacataactcagttgacagaaataatgaattgttataggtagggttttggttcgaactccaaacaactcatttattcatcttaaaaagtga 163  Q
    |||||||| ||||||||||||| |||||| |||||||||   |||| |  ||||||||| |  ||||  ||||||||||| ||||||||||||    
T  924425 tgaacatatctcagttgacagagataatgtattgttatatacagggataaggttcgaaccctgaacatttcatttattcaccttaaaaagtga 924333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 4045112 - 4045052
Alignment:
Q  121 ggttcgaactccaaacaactcatttattcatcttaaaaagtgatttctaaccattaaacta 181  Q
    ||||||||| ||||||| | || |||||||  ||||||||||| ||||||| |||||||||    
T  4045112 ggttcgaaccccaaacaccccacttattcactttaaaaagtgaattctaacaattaaacta 4045052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 55195904 - 55195845
Alignment:
Q  122 gttcgaactccaaacaactcatttattcatcttaaaaagtgatttctaaccattaaacta 181  Q
    ||||||||||| |||| ||||||||||||||||| || |||| || ||||||||| ||||    
T  55195904 gttcgaactccgaacacctcatttattcatcttataaggtgaattataaccattagacta 55195845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 34807844 - 34807886
Alignment:
Q  139 ctcatttattcatcttaaaaagtgatttctaaccattaaacta 181  Q
    |||| |||||||||||||||| ||| |||||||||||||||||    
T  34807844 ctcagttattcatcttaaaaaatgaattctaaccattaaacta 34807886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 45199900 - 45199858
Alignment:
Q  144 ttattcatcttaaaaagtgatttctaaccattaaactacttga 186  Q
    |||||||| ||||||||||| |||||||||||| |||||||||    
T  45199900 ttattcattttaaaaagtgaattctaaccattagactacttga 45199858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 4985833 - 4985875
Alignment:
Q  144 ttattcatcttaaaaagtgatttctaaccattaaactacttga 186  Q
    |||||||||||||||||||| ||||| |||||| |||||||||    
T  4985833 ttattcatcttaaaaagtgaattctatccattagactacttga 4985875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 12126327 - 12126238
Alignment:
Q  94 ataatgaattgttataggtagggttttggttcgaactccaaacaactcatttattcatcttaaaaagtgatttctaaccattaaactactt 184  Q
    |||||| ||||||||| ||| ||||  | || ||||| |||| | |||||||||||||||| |||| ||| ||||||||| ||||||||||    
T  12126327 ataatgcattgttatatgtacggttgcgttttgaacttcaaatacctcatttattcatctt-aaaattgaattctaaccactaaactactt 12126238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 35149909 - 35149950
Alignment:
Q  122 gttcgaactccaaacaactcatttattcatcttaaaaagtga 163  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  35149909 gttcgaaccccaaacaactcatttattcatcataaaaggtga 35149950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 15126293 - 15126353
Alignment:
Q  121 ggttcgaactccaaacaactcatttattcatcttaaaaagtgatttctaaccattaaacta 181  Q
    ||||||||||||  ||| | |||||||||| |||| || |||| |||||||||||||||||    
T  15126293 ggttcgaactccggacaccccatttattcaccttataaggtgaattctaaccattaaacta 15126353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University