View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1405_high_3 (Length: 252)
Name: NF1405_high_3
Description: NF1405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1405_high_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 8340649 - 8340512
Alignment:
| Q |
115 |
agtctcctaaaatttgttcatgtttaaaacggtctataatgtgtgtgtagtattcgtttcaatccttatccttatgtagccatattgaaatggtctaata |
214 |
Q |
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| T |
8340649 |
agtctcctaaaatttgttcatgtttaaaacggtctataatgtgtgtggagtattcatttcaatccttatccttatgtagccatattgaaatggtctaata |
8340550 |
T |
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| Q |
215 |
taaaatcaaatgttctagctattaaaatgacaaattcc |
252 |
Q |
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| T |
8340549 |
taaaatcaaatgttctagctattaaaatgacaaattcc |
8340512 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 8340753 - 8340681
Alignment:
| Q |
11 |
cagagagactgacgaacaaacaagaaaatgttatatatcacaattcagaaaccaaacaaatcaaatgtactag |
83 |
Q |
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| T |
8340753 |
cagagagactgacgaacaaacaagaaaatgttatatatcacaattcagaaaccaaacaaatcaaatatactag |
8340681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 17477667 - 17477635
Alignment:
| Q |
44 |
tatatcacaattcagaaaccaaacaaatcaaat |
76 |
Q |
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| T |
17477667 |
tatatcacaattcagaaaccaaaaaaatcaaat |
17477635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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