View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1405_low_3 (Length: 329)
Name: NF1405_low_3
Description: NF1405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1405_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 301
Target Start/End: Complemental strand, 15161437 - 15161159
Alignment:
| Q |
23 |
atcatcacaaatgctaataaatagtccagcacatgcttgtttctgtgaactgtgttctctgctaacaatagttctatctatttgattcagaaactatagg |
122 |
Q |
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| T |
15161437 |
atcatcacaaatgctaataaatagtccagtacatgcttgtttctgtgaactgtgttctctgctaacaatagttctatctatttgattcagaaactatagg |
15161338 |
T |
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| Q |
123 |
ttctcctttttgtattgatgtggaattcaagtggtattgattgtctttttgctttttatagattttgttaactagtagtttgttactaatatgatatgtt |
222 |
Q |
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| T |
15161337 |
ttctcctttttgtattgatgtggaattcaagtggtattgattgtctttttggtttttatagattttgttaactagtagtttgttactaatatgatatgtt |
15161238 |
T |
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| Q |
223 |
gactaggtgcagtttcaccgcatacatactggcgctgggaagattgttcctgaagtataggaggatggaattgtatggt |
301 |
Q |
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| T |
15161237 |
gactaggtgcagtttcaccgcatacatactggtgctgggaagattgttcctgaagtctaggaggatggaattgtatggt |
15161159 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 18812507 - 18812589
Alignment:
| Q |
23 |
atcatcacaaatgctaataaatagtccagcacatgcttgtttctgtgaactgtgttctctgctaacaatagttctatctatttg |
106 |
Q |
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| T |
18812507 |
atcatcacaaatgctaataaaatgtcaagcacatgcttgtttctatgaac-gtgttctctgctaacaatagttctctctatttg |
18812589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 37727729 - 37727630
Alignment:
| Q |
58 |
cttgtttctgtgaactgtgttctctgctaacaatagttctatctatttgattca---gaaactataggttctcctttttgtattgatgtggaattcaagt |
154 |
Q |
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| T |
37727729 |
cttgtttccttgaactgtgttatcagctaacaatagttatatgtattcgattcatcagaaactatgggctttcctttttgtattgacgtggaattcaagt |
37727630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 40250209 - 40250142
Alignment:
| Q |
230 |
tgcagtttcaccgcatacatactggcgctgggaagattgttcctgaagtataggaggatggaattgtatg |
299 |
Q |
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| T |
40250209 |
tgcagtttcacc--atacacactggtgctgggaagattgttcctgaagtcttgggggatggaaatgtatg |
40250142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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